Protein

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Genbank accession
AUS02120.1 [GenBank]
Protein name
WD40/YVTN repeat-like-containing domain protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,73
Protein sequence
MTLKVVDPINITEAVLTASDIPEPDASVGEVEWQDPTILGRFGNLPDVQYAVALGSDGFLYSFGRAGAVVKIDPDTSTMTTFGSYNVGRVYAAALAGDGNIYAVGSGGTVLKLEVSTQTLSTFGSYPGTCESATLAPNGDIYCVSTNGFVLKIDVSAQSVSQFGSYGSGYKTSSLGGDGNIYCAGLQGDVLKIDVNEQTVSTFGSVTGKYYGSATGVDGNVYCVGYSGNVLKINVSNQSVSTFGSCVGAFESAALDGNGRIKCVASSSTTSNGDILEIDTASESIYRFGSYTDDFFSIALAPNGKMFAVGNNVGGSTGVIEILDTYSPGDRVILESEHLVYQCLSVTYQNPKDGATDDAAATWIVVGPTNKWAMFDGLQNTKTSNSTDFTVTLKPVTYVNTLAMFGFSGVESLRIEVDNSLDVNIYDKTYSMSDFSAIYDHYTYVFYQIASLDDFIATDLPPLPNTTIRVTFSGSAMKIGELVTGFAIDIGQLVAENTKSDRFRYREQAYNEFGYPTGNAPIVVELNTYDVLVPKLNNQAIQKLLDTLTGENTLWFGDIGGGQSLVTYGFFERSPIPYAMPNHINYQITVRASV
Physico‐chemical
properties
protein length:594 AA
molecular weight: 63405,85650 Da
isoelectric point:4,31081
aromaticity:0,10943
hydropathy:0,00370

Domains

Domains [InterPro]
DC_2002
ATT
1–50
DC_2002 DC_1523 DC_1523
IPR015943
STR
14–346
IPR015943
IPR051344
Unmapped
25–299
IPR051344
SSF101898
RBD
46–261
SSF101898
AUS02120.1
1 594
Architecture
ATT
STR
ATT 1-50 | STR 51-594
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUS02120.1
1 594
Domain Start End Length (AA) Confidence
N-terminal 1 287 287 0,6318
Central domain 288 486 200 0,1450
C-terminal 487 594 107 0,1637
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-287
Central
288-486
C-terminal
487-594

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.095.A._10N.286.46.E10
[NCBI] 		1881403 No lineage information
Host Vibrio sp. F12
[NCBI] 		2070776 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS02120.1 [NCBI]
Genbank nucleotide accession
MG592664 [NCBI]
CDS location
range 26482 -> 28266
strand +
CDS
ATGACTTTAAAGGTAGTTGACCCAATTAACATTACGGAGGCGGTATTAACCGCTTCTGACATACCAGAGCCTGATGCTAGTGTGGGCGAAGTCGAGTGGCAAGACCCTACCATTCTAGGTAGGTTTGGCAACTTACCAGACGTACAGTATGCAGTGGCGCTTGGTAGCGATGGGTTCTTATATTCTTTCGGCAGGGCAGGTGCTGTTGTTAAAATTGACCCAGACACTAGTACAATGACAACTTTCGGAAGTTACAATGTAGGCAGGGTTTATGCTGCCGCTCTCGCTGGTGATGGAAACATCTACGCCGTCGGCAGTGGAGGCACTGTACTTAAACTGGAAGTGTCAACACAAACTCTATCAACGTTCGGCAGTTATCCGGGGACTTGTGAATCAGCAACTTTAGCCCCTAATGGTGATATCTACTGCGTATCAACAAATGGATTTGTTCTCAAAATAGATGTTAGCGCTCAATCTGTATCTCAATTTGGAAGTTATGGATCGGGATATAAAACGTCATCACTTGGTGGTGATGGCAATATTTACTGTGCAGGTCTTCAGGGTGACGTGCTTAAAATAGACGTTAACGAGCAAACCGTCTCTACATTTGGCAGTGTTACCGGCAAGTATTACGGCTCGGCTACTGGTGTTGACGGTAACGTTTACTGCGTAGGTTATTCTGGCAACGTTCTAAAAATAAACGTATCAAATCAATCTGTATCGACATTTGGCTCTTGTGTTGGTGCATTTGAATCCGCCGCGCTAGATGGTAACGGTAGAATCAAGTGCGTAGCGTCATCTAGCACCACGTCAAATGGTGATATTCTAGAGATAGACACAGCATCTGAAAGCATATACAGGTTCGGAAGTTACACTGATGACTTTTTTTCCATAGCTCTCGCGCCAAATGGGAAAATGTTTGCAGTTGGTAACAATGTTGGAGGTTCGACGGGCGTTATTGAGATTCTAGATACTTACTCACCTGGTGACAGGGTTATCCTTGAGTCTGAGCATTTGGTCTACCAGTGCTTAAGTGTTACATACCAAAACCCAAAAGATGGCGCAACAGATGACGCAGCAGCAACTTGGATTGTGGTTGGCCCAACAAATAAATGGGCCATGTTTGATGGACTGCAAAACACAAAAACTTCCAACTCAACGGATTTTACGGTAACACTAAAACCAGTCACTTATGTAAATACACTGGCGATGTTTGGATTTAGTGGTGTCGAGTCGTTAAGAATAGAAGTTGACAATAGTCTTGACGTAAATATTTATGATAAAACATATTCAATGTCTGACTTCTCAGCAATCTATGACCACTACACCTATGTGTTTTACCAGATAGCTAGCTTGGACGACTTCATAGCTACCGACTTGCCACCACTGCCAAATACAACAATAAGAGTTACATTCTCAGGCTCAGCAATGAAAATAGGCGAACTTGTCACTGGCTTTGCAATTGACATTGGCCAACTAGTAGCCGAAAACACCAAGTCAGACAGATTTAGATACAGAGAGCAGGCATATAACGAGTTTGGCTATCCAACCGGCAACGCTCCGATAGTTGTTGAATTAAACACTTACGATGTGCTGGTTCCAAAACTAAACAACCAGGCAATTCAGAAACTTTTAGATACACTAACTGGAGAAAACACGCTTTGGTTCGGTGATATCGGAGGAGGACAAAGTCTAGTTACATACGGATTCTTTGAGCGTAGCCCTATTCCTTATGCAATGCCAAATCATATTAACTATCAAATCACTGTACGCGCATCCGTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
55c6d2f0978ce1f4ee99ec787f7cadb665d693203596e954783229a5bc5b21a0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8777
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank