Protein

View in Explore
Genbank accession
YP_001285691.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,82
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MASNLVVTPHPLTLDGQTHIPAQLLPGQSLYSFLAANAPDTLDGGWAVTIGGRQVPVEMWTKTFPKDGHLIEVRSTVDNKQAFQLIALLVLTYFTFGIGAAAGAWTVAGAYGAVAATAVYVAGSVIINKVLGPKPPKTPAAEESGGVYSLNGATNSSRPYQALGIPFGAIDIAPDLLSKPYSYFDGDDQYLALLLTPGINVARVDNVRNGDNPFSNYPGSQLFSSGMSGMPQQAIPLFTDVDSQAGGALQDEDKNPAVVVRTTPPDTVRIQVDIEYTLFGKGKKGNALYNEGTVTAEYRTAGSGSWLNLETRYVTNKDMRVHRMSLKKDVPPGQYDVRVTRSVMSLTGDNDVAQFNFTSLTSVQRDTAQYLGISRVGIIFKATGQLSGTPNEIKMRVTAKPVQTWTGTQWRIADTVDNGLSNPGAQMLAYIRGYYDEAGNLIGGMGLSDMFIDIPAFQAFILHCEANDYKYNYYLRDSRTHSEVLESIALVGFGQVTNATGKISVAWAGANQPVTAVVGMGTIRQGQFGVDYTLSNTADGVELSYFDADIGDTSVVRVASPGVTTALNPARIQAEGITTAKHAAEMARYHLGQSLYQAKDITFGADIEHITYRRLSVLSLSHDLTQWGYSGRLMAAAKVSGVVTLFLDTEVPPPSAGNAYVGVRIPGELSYRVMQVRPFSAPSKSIQLVGAWPIDAAFPGEASDNPAWDTTYCYDFKASPGYTVRVVGITPDADLKGAQVSVVPESAEFWNYVKTGTYIPAPNGSGLNTRPTVSGLKIVEAQVVQGNTVFTELSATWEVSGPYARADVLMAEGSGDSLLQTTSTTRSATWRIPGAGVYTVTVRPFNPDGLAGYAQSIVFATKGADAPPVNPDIFDVQQVSGGLRRYVWGFGSDTIQSADYAGVEIRYTSGSVQSPVWETMLPVAGDDGSGLHTAPFESPTPVSGTYTFSLRAVNTSGRLSDQTLTIVRALGKNLGELLDQINNDVSKAIVDAFQRDEAEARARVDAINAVITQVQDEATARATAVQQVTAALNQSIADQTAALLNEQLDRQAAIQTANQLRQSGDESLAYQISQISAGTGMQFDGIKTWYFDTSSEGWNGTAASGYLNPGDVYATSPTGLGVNGNAHRYVKMRIKRVGTPVWSGQLGWRSAGGTWSSLALSAPTFDANGVATVDANDIPWADTTVDQIRVKLSDTVTSSNYYLFDWVAIGRPTPGASVALVEDVRQANATALAAEAQQRNTLAVQLRGNYTGNDLDGLTSGLVYQERTARVTETSAISTRVDGMQVSLDGKASASALQTLSTKVETIDDRVTSASESVFALEAQLDGHTAGETGWTAGDTSVHVGARTVYSVIAESDIALARRVDTVSSDLGQFKGSATQQLQTLSTAQDSQAQLYQQVSASLDTKASTSSVNLLTTRVTEAEGNITANSQNIAQAQAAIANKADASAVSALQTTVTTIDGRTTANANSITAVQAAVDGKAAASTVLELTATVNSQGSTLTSINSQAFLALNSNNYIGGFKIGNNGQVVDFTVLADNFRIVAPAGGARLEYSAGTLRVYDNNNVLRVELGKLS
Physico‐chemical
properties
protein length:1573 AA
molecular weight: 166893,06340 Da
isoelectric point:4,96803
aromaticity:0,07883
hydropathy:-0,12511

Domains

Domains [InterPro]
DC_0129
STR
1–1097
DC_0129 DC_0793
IPR055385
ATT
257–364
IPR055385 DC_1268
YP_001285691.1
1 1573
Architecture
STR
ATT
STR
STR
STR 1-256 | ATT 257-364 | STR 365-1097 | STR 1148-1569 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xop411
[NCBI] 		2913975 Uroviricota > Caudoviricetes > Xipdecavirus >
Host Xanthomonas oryzae
[NCBI] 		347 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001285691.1 [NCBI]
Genbank nucleotide accession
NC_009543.1 [NCBI]
CDS location
range 13591 -> 18312
strand +
CDS
ATGGCATCAAACTTAGTAGTTACCCCGCATCCACTAACATTGGACGGGCAGACACACATCCCGGCACAGCTTTTGCCTGGCCAATCGTTGTATAGCTTCTTGGCAGCAAATGCCCCTGACACTTTGGATGGTGGCTGGGCAGTGACAATTGGTGGTAGGCAAGTCCCTGTAGAGATGTGGACTAAGACATTCCCGAAGGATGGCCACCTAATTGAGGTTCGCAGCACGGTGGATAACAAGCAGGCATTCCAGCTGATCGCATTGCTTGTATTGACTTACTTTACCTTTGGGATCGGGGCAGCCGCTGGAGCTTGGACAGTTGCAGGCGCCTATGGTGCAGTGGCGGCAACTGCCGTATATGTTGCCGGCTCGGTAATTATCAACAAGGTCTTGGGTCCAAAACCACCAAAGACGCCCGCTGCTGAAGAGTCCGGAGGTGTTTACAGCCTTAATGGGGCAACAAATTCCAGCAGGCCATATCAGGCACTAGGCATCCCGTTTGGTGCTATCGACATCGCCCCAGATCTACTTTCAAAGCCTTACTCATACTTTGATGGTGATGACCAGTACTTGGCATTATTGCTCACTCCTGGTATTAATGTGGCAAGGGTTGACAATGTACGTAATGGGGACAACCCATTCTCGAATTATCCTGGCTCTCAGTTGTTTTCATCTGGGATGTCCGGTATGCCGCAACAGGCAATCCCGTTGTTCACGGACGTCGATAGTCAGGCTGGCGGCGCCTTACAGGACGAGGACAAGAATCCAGCAGTTGTCGTGAGAACAACACCGCCAGACACTGTTCGTATCCAGGTTGATATTGAATATACCTTGTTTGGTAAGGGAAAGAAGGGTAATGCACTTTACAATGAGGGCACAGTAACAGCAGAGTATCGTACAGCAGGTTCTGGGTCATGGTTAAATCTGGAGACGAGGTATGTAACAAATAAAGACATGCGCGTGCATCGTATGTCCTTGAAGAAAGATGTTCCGCCGGGTCAGTACGATGTTAGGGTTACTCGCAGTGTTATGTCACTTACTGGCGACAATGATGTGGCTCAGTTTAACTTCACTAGCCTCACATCTGTGCAGAGGGATACTGCACAGTACCTTGGCATTTCGAGGGTGGGTATCATCTTTAAGGCTACCGGCCAGCTGTCTGGCACGCCAAATGAGATAAAGATGCGGGTAACTGCCAAGCCGGTACAGACCTGGACTGGCACTCAGTGGAGGATTGCAGATACTGTAGACAATGGACTGAGCAACCCAGGTGCACAGATGCTGGCCTATATCCGTGGTTACTATGATGAGGCTGGTAATCTAATTGGCGGTATGGGTCTGTCGGATATGTTCATCGACATCCCCGCATTTCAGGCGTTCATTCTTCATTGTGAGGCAAATGACTATAAGTACAACTACTACCTGCGTGATAGCAGGACACATAGTGAGGTACTTGAGTCAATTGCACTTGTTGGGTTTGGCCAGGTTACAAATGCCACAGGGAAAATATCTGTTGCATGGGCAGGTGCAAATCAGCCTGTTACTGCCGTTGTTGGTATGGGCACAATTCGCCAGGGGCAGTTTGGCGTTGATTACACATTGTCAAACACTGCGGACGGTGTCGAGCTCAGCTACTTTGATGCGGATATCGGAGACACATCCGTTGTACGTGTTGCATCACCTGGTGTTACTACCGCTCTGAACCCAGCACGTATCCAGGCAGAGGGCATCACCACTGCAAAGCATGCGGCAGAAATGGCACGTTACCATCTCGGTCAGTCACTGTATCAGGCAAAGGACATAACGTTCGGCGCAGACATTGAGCATATCACCTACCGAAGGCTGTCGGTGTTGTCACTGTCCCATGACCTAACACAGTGGGGGTACAGTGGTCGTTTGATGGCGGCTGCTAAGGTAAGTGGGGTTGTCACGCTGTTCCTCGACACGGAAGTTCCTCCTCCGTCAGCAGGCAATGCCTATGTAGGTGTTAGAATCCCAGGTGAGCTAAGCTACCGTGTAATGCAGGTAAGGCCATTCTCGGCCCCATCTAAGTCAATCCAACTTGTTGGTGCTTGGCCTATTGATGCTGCATTCCCCGGGGAGGCAAGCGATAATCCTGCTTGGGATACCACATACTGTTACGACTTTAAGGCAAGCCCGGGCTACACTGTGCGTGTTGTTGGAATTACGCCAGACGCAGACCTCAAAGGGGCGCAGGTGTCTGTTGTTCCCGAGTCCGCCGAGTTCTGGAATTATGTAAAGACAGGGACATACATACCAGCACCTAATGGCTCGGGCCTTAATACTCGACCTACAGTAAGCGGCCTGAAGATTGTTGAGGCGCAGGTTGTACAGGGTAACACTGTATTTACTGAGCTGAGTGCAACCTGGGAAGTGTCGGGCCCATATGCAAGGGCAGATGTGTTGATGGCCGAAGGGTCAGGCGATAGCTTGTTGCAAACGACCTCAACCACTCGCTCAGCAACCTGGAGGATTCCGGGTGCCGGTGTCTACACAGTCACTGTCAGACCATTTAATCCAGATGGCCTAGCAGGGTATGCACAAAGCATTGTATTTGCCACTAAGGGTGCAGATGCCCCGCCAGTCAATCCCGACATATTTGATGTCCAGCAAGTGTCGGGCGGTCTGCGCAGGTATGTGTGGGGATTTGGGTCTGATACCATCCAAAGTGCTGATTATGCAGGTGTCGAGATCAGGTATACGTCAGGGTCTGTACAGTCTCCAGTATGGGAGACTATGCTGCCTGTGGCGGGTGATGATGGGAGTGGTTTACACACTGCGCCCTTTGAGTCGCCCACACCTGTATCTGGTACCTACACATTCTCGCTTCGGGCAGTAAATACATCTGGCCGTCTATCGGATCAAACTCTGACCATTGTGAGAGCACTTGGGAAAAACCTTGGAGAGCTGCTAGATCAGATCAATAATGATGTGTCTAAGGCAATCGTTGATGCTTTCCAGAGAGACGAGGCGGAGGCTCGGGCACGTGTGGATGCCATCAATGCTGTTATCACACAGGTGCAGGATGAGGCTACAGCACGTGCTACAGCAGTGCAGCAGGTAACTGCTGCTCTCAATCAATCGATTGCAGATCAGACAGCAGCACTGCTCAATGAGCAGCTTGACAGACAGGCAGCAATACAGACTGCAAATCAGTTGAGGCAATCTGGTGATGAGTCTTTGGCTTACCAGATCTCACAGATAAGTGCCGGTACAGGCATGCAGTTTGATGGTATTAAAACTTGGTATTTCGACACGAGCAGTGAAGGCTGGAATGGCACTGCTGCATCGGGGTATCTGAATCCTGGGGATGTCTACGCCACTTCGCCCACAGGCCTTGGTGTAAATGGTAATGCCCATAGGTATGTCAAGATGCGGATCAAGAGGGTGGGAACACCTGTTTGGTCTGGGCAGCTTGGTTGGCGGAGTGCAGGCGGGACATGGTCCTCACTTGCACTGTCAGCTCCAACCTTTGATGCAAATGGGGTGGCAACAGTAGATGCTAATGATATCCCGTGGGCTGACACAACAGTTGACCAGATTAGGGTTAAGTTGTCAGACACCGTTACATCTAGCAACTACTACTTGTTTGACTGGGTAGCTATTGGTCGACCAACACCTGGTGCATCTGTGGCGTTGGTTGAGGATGTCCGTCAGGCTAATGCAACTGCCCTGGCAGCAGAGGCTCAGCAGCGCAACACTTTGGCTGTACAGCTGAGAGGCAACTACACTGGCAATGACCTGGATGGGTTGACTAGTGGCCTGGTCTACCAAGAGAGGACAGCCCGTGTTACAGAGACATCGGCAATTAGTACGCGTGTCGATGGTATGCAAGTATCTCTGGACGGCAAGGCATCTGCATCGGCCTTGCAGACACTGTCGACAAAGGTTGAGACAATTGATGACAGGGTTACAAGTGCATCCGAGTCTGTATTCGCGCTGGAGGCACAGCTGGATGGGCATACAGCCGGTGAAACAGGCTGGACAGCCGGTGATACCAGTGTGCATGTTGGTGCCAGGACTGTATACAGTGTGATTGCTGAGTCAGACATTGCACTGGCACGGCGAGTTGATACAGTGTCTTCTGACCTTGGTCAGTTCAAGGGGTCTGCGACTCAGCAGCTCCAAACGCTGTCAACGGCCCAGGATTCACAGGCGCAGCTATACCAGCAGGTGTCCGCATCACTTGACACAAAGGCGAGCACATCCTCTGTTAATCTGCTTACAACAAGGGTTACAGAGGCTGAGGGTAACATAACTGCTAACTCTCAGAATATTGCACAGGCACAGGCAGCCATTGCAAATAAGGCAGACGCAAGTGCAGTAAGTGCCCTGCAAACAACTGTCACCACAATTGACGGGAGGACCACAGCCAATGCAAACTCAATCACGGCGGTACAGGCTGCCGTCGACGGTAAAGCGGCTGCAAGCACGGTGTTGGAGTTGACGGCCACTGTAAACTCACAGGGGTCGACACTGACGTCAATCAACTCCCAGGCATTCTTGGCACTCAATTCCAATAATTATATTGGCGGGTTCAAGATTGGCAATAATGGCCAGGTGGTGGACTTCACGGTCTTGGCAGATAACTTCCGGATTGTTGCTCCTGCTGGTGGTGCAAGGCTGGAGTACAGTGCAGGGACACTGCGGGTCTATGACAACAACAATGTGCTGAGGGTCGAGCTAGGTAAACTGAGCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
06db9240167c430576f5d4806c88d165bc963453f9d9ff474cfd5e2372f29cfb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7603
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative Xanthomonas oryzae phage genomics: insights into HNH endonucleases Weng,S.-F., Tseng,Y.-H., Lin,J.-W., Lee,C.-N., Chen,H.-Y. and Chow,T.-Y. 2006-12 — GenBank