Protein

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Genbank accession
YP_009191761.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATKYYAVLTNVGAAKLANATALGAQVEITKMAVGDGNGALPTPSPAQTALVHELRRAPLNSLSIDPNNANQIIAEQVIPEDVGGWWIREIGLFDKDGDMIAVANCAETYKPQLQEGSGRVQVVRMILIVSSTAAVTLKIDPSVVLATRQYVDNKIIEAKSYTDGLILTHEQSRNHPDATTAEKGFVQLNSSVADERESQAATPKAVKIAMDNASARLAKDRNLGDLPNPALARQNLRLGDSSTKNTGTTADTVAAGDDSRIISTKKAIDDTQIGLAAQPVMWVSTADDLSSLPSGARRFASNKAPATILPVNDYVFLEVIAKRDCVDGCTVLITDSIGNAWIGARWDATNGSGFTWLPLMSCPPGVPLPWPSDTIPAGYALMQGQTFDKSAYPLLAIAYPSGVIPDLRGWIIKGKPASGRAVLSQELDGNKSHSHSARAQDTDLGTKGTSSFDYGTKSSNTTGGHNHSAGGTYGGDSIGGKARVQRDGNDQLTSWNGDHAHTTWIGPHDHTVYIGPHGHAVTVDADGNAETTVKNIAFNYIVRLA
Physico‐chemical
properties
protein length:546 AA
molecular weight: 57810,07350 Da
isoelectric point:5,91065
aromaticity:0,05678
hydropathy:-0,25403

Domains

Domains [InterPro]
IPR022225
ATT
1–150
IPR022225 IPR005068 SSF88874
DC_0381
STR
1–545
DC_0381
IPR051934
Unmapped
361–546
IPR051934
IPR037053
ATT
361–414
IPR037053
IPR011083
ATT
366–412
IPR011083
YP_009191761.1
1 546
Architecture
ATT
STR
ATT
STR
ATT 1-150 | STR 151-360 | ATT 361-414 | STR 415-545 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SEN5
[NCBI] 		1647466 Uroviricota > Caudoviricetes > Peduoviridae > Senquatrovirus SEN4 >
Host Salmonella enterica subsp. salamae
[NCBI] 		59202 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009191761.1 [NCBI]
Genbank nucleotide accession
NC_028701.2 [NCBI]
CDS location
range 11912 -> 13552
strand +
CDS
GTGGCGACTAAATATTATGCCGTGCTAACCAATGTGGGCGCGGCGAAACTGGCAAATGCCACGGCATTGGGTGCGCAGGTTGAGATCACCAAGATGGCTGTAGGCGATGGTAACGGCGCATTGCCGACACCAAGCCCGGCACAAACGGCGCTGGTTCATGAGCTGCGACGCGCACCGCTCAATAGCCTGAGCATTGACCCGAATAACGCCAACCAGATTATTGCCGAACAGGTGATCCCCGAAGACGTGGGCGGGTGGTGGATTCGTGAAATTGGTCTGTTTGATAAAGACGGCGATATGATTGCCGTCGCCAACTGTGCGGAAACCTATAAGCCGCAGTTACAGGAGGGAAGCGGGCGCGTGCAGGTGGTGCGCATGATTCTGATTGTCAGCAGTACTGCCGCCGTGACGCTGAAAATTGACCCTTCGGTAGTGCTGGCAACCCGTCAGTACGTTGATAATAAAATTATTGAGGCGAAGAGTTATACTGACGGACTGATACTTACTCACGAACAATCGCGTAACCATCCTGATGCAACCACAGCAGAAAAGGGGTTCGTACAGCTAAACAGTAGTGTGGCGGACGAAAGAGAGTCACAAGCTGCAACCCCAAAAGCCGTAAAAATCGCAATGGATAATGCGAGTGCAAGGCTGGCTAAAGATCGCAACCTTGGCGATTTACCTAATCCAGCACTGGCACGCCAGAACCTGAGATTGGGTGACAGTTCGACTAAAAATACAGGTACAACCGCCGATACCGTGGCCGCAGGTGACGACAGCCGCATTATCAGCACCAAAAAAGCCATTGACGACACCCAAATCGGTCTTGCTGCTCAACCCGTTATGTGGGTAAGCACCGCCGATGATTTAAGTAGCCTGCCGTCTGGTGCTCGCCGGTTCGCCAGCAATAAAGCTCCGGCAACAATATTGCCGGTAAACGATTATGTTTTCCTTGAGGTGATTGCCAAGCGCGATTGCGTAGACGGTTGCACCGTTCTGATAACAGACTCAATCGGTAACGCCTGGATTGGCGCGCGTTGGGATGCAACCAATGGTTCCGGTTTTACCTGGCTTCCCCTGATGTCGTGTCCGCCCGGCGTTCCCCTTCCGTGGCCGTCTGACACCATCCCTGCCGGTTACGCCCTGATGCAGGGGCAAACATTTGATAAATCTGCTTACCCGTTACTGGCTATAGCATATCCGTCCGGCGTTATTCCGGATCTGCGAGGCTGGATAATCAAAGGCAAGCCCGCGAGCGGGCGCGCTGTGCTCTCTCAGGAGCTGGATGGCAACAAATCGCACAGTCACAGCGCCAGAGCGCAGGATACCGATCTGGGAACGAAAGGTACGTCGTCATTTGATTACGGAACGAAGAGCTCTAATACAACAGGCGGTCATAACCATTCAGCGGGCGGCACATACGGTGGTGATTCAATCGGTGGAAAAGCTCGCGTTCAGCGTGATGGCAATGACCAGTTAACAAGCTGGAATGGCGATCACGCTCATACCACATGGATTGGCCCGCACGACCATACCGTATATATCGGCCCACACGGACACGCTGTCACGGTGGACGCAGACGGTAATGCGGAAACCACAGTTAAAAACATTGCATTTAACTATATTGTGAGGCTGGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
fcef5ce1de7b2f8155e722dffa9ba5ddb9bbfbaad85c87c1c77f285294b6b3bd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7662
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phages of Salmonella enterica subsp. salamae and subsp. diarizonae: novel phages with a mosaic genome structure and activity against pathogenic S. enterica subsp. enterica isolates Pastekova,L., Bosak,J., Dedicova,D., Benada,O., Smarda,J. and Smajs,D. — — GenBank