Protein

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Genbank accession
YP_007236096.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTRNVESIFGAVVTAPHQIPYTYTATGGETFISLPFYPVTGFITINGGVQVPVDNYMIDGNTVNLGRALEAGDVVYCLFDKILSPEDYENGIRIYKFQAIGGETEFTPDYTSYGVQSLYIGGEYKTPEIEYSYDRTTGKVSLQTALTTGVWVVAEMSVKQPNISPLFDRSIQEVARATNVKDSEVILSTDTTQFLNNKKVIYSVSEQKAYGLPALPSNIYINSVSNGQLTYSPGNITVELLPVPDAELDAFKDTLASSNGYTHIGGLNERFSLPNKWVVVDNAPYYGDLELAVTSNSSNTAFLLGKGKSYDFLTFRTARNTKKNLTFFGSGVPELASDKRSFVPGTGTIIRGPMKTEVSGWQLVNLGIDCGAQTSVDLFGGQWDDPIQCYGLGDNANVFIDNVKTLSHTNLSGPDYPGTHSLLLEILDGAYVGKVELIGGFHGLTLKGTNIDVMDAHCYGQRGDAFIIKSDSAALAADIYIGKLKVGLRNNSGFTDVTMGGIYDAHDGVNIDNVEIGSLQVYNASWGLIPSGANTGYISNLRINSYVAMNVYGNYYSLVIDGRCVGVNIGEHQCSNTSGGISIDPNAVNVTLGNGFSKGSTKSGYALGSNSLVHGNLIADENGEFGVDYKGGVGFDASKILGYSNAFGLVSAVPTALNGNSPQNNWADTGAFMVQLTGKTVTVSGSMVVGNGAVAYTTLDICRPKKRIPIAAWGVAGNAMIPVECYIETNGDLNVVGYASITAGNQIHFSGQYLIY
Physico‐chemical
properties
protein length:756 AA
molecular weight: 80818,66540 Da
isoelectric point:4,85259
aromaticity:0,10053
hydropathy:-0,04497

Domains

Domains [InterPro]
DC_0116
ATT
1–92
DC_0116 G3DSA:3.30.2020.50 DC_0478
YP_007236096.1
1 756
Architecture
ATT
ATT
STR
ATT 1-92 | ATT 155-247 | STR 251-756
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007236096.1
1 756
Domain Start End Length (AA) Confidence
N-terminal 1 284 284 0,9928
Central domain 285 646 363 0,9938
C-terminal 647 756 109 0,9909
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-284
Central
285-646
C-terminal
647-756

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SKML-39
[NCBI] 		1204528 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236096.1 [NCBI]
Genbank nucleotide accession
NC_019910.1 [NCBI]
CDS location
range 408 -> 2678
strand +
CDS
ATGACCAGAAACGTCGAGAGCATCTTTGGAGCGGTCGTCACAGCCCCGCACCAGATTCCATACACTTACACCGCAACGGGTGGAGAGACGTTTATCTCCCTCCCGTTCTACCCTGTTACGGGCTTCATCACCATCAACGGCGGTGTTCAAGTCCCTGTGGACAATTATATGATTGACGGCAACACGGTCAACCTTGGTCGAGCGCTTGAGGCCGGGGATGTCGTGTACTGCCTGTTTGACAAGATCCTGTCCCCAGAAGATTATGAAAACGGGATCAGAATCTATAAGTTTCAGGCTATAGGAGGTGAAACCGAGTTCACTCCTGATTACACATCTTATGGAGTCCAATCTCTTTATATCGGCGGTGAGTACAAAACACCCGAAATTGAATATTCCTATGACAGAACGACAGGGAAAGTGTCTTTGCAAACTGCACTGACTACAGGCGTTTGGGTAGTCGCTGAAATGTCTGTTAAACAACCGAATATCAGTCCGTTGTTTGACCGAAGTATTCAAGAAGTTGCTCGTGCTACTAACGTTAAGGATAGTGAGGTAATTCTTAGTACAGATACTACCCAGTTCCTGAATAATAAGAAGGTTATTTATTCTGTTAGTGAGCAGAAAGCATATGGGCTACCGGCGTTGCCTTCTAATATTTATATTAATTCAGTATCAAATGGTCAGTTAACATATTCGCCAGGAAATATTACTGTTGAATTGTTGCCTGTACCTGATGCTGAATTAGATGCATTCAAAGACACTTTAGCTAGTTCTAATGGGTACACACATATTGGTGGATTGAATGAAAGATTTAGTTTACCTAACAAGTGGGTGGTTGTAGATAATGCCCCTTACTATGGTGACCTGGAATTAGCAGTTACATCCAATAGCTCTAATACTGCATTCCTCTTAGGTAAAGGTAAGTCTTATGACTTCCTTACTTTCCGTACTGCCCGTAATACCAAAAAGAACTTAACGTTCTTTGGTTCTGGTGTACCAGAACTAGCTTCTGATAAACGTAGCTTTGTTCCCGGTACTGGCACTATTATCCGTGGTCCGATGAAGACTGAGGTGTCTGGATGGCAATTAGTCAATCTGGGTATTGACTGTGGTGCGCAGACTTCCGTAGACCTTTTTGGCGGACAATGGGATGACCCTATTCAATGTTACGGGTTGGGAGATAATGCCAATGTATTTATTGATAATGTTAAGACATTAAGCCATACCAACCTATCTGGCCCAGATTACCCAGGTACTCACAGTTTACTGCTTGAGATACTAGATGGTGCTTATGTTGGTAAAGTTGAATTAATTGGTGGTTTCCATGGCCTTACGTTGAAAGGTACTAACATTGATGTAATGGATGCTCACTGTTACGGGCAACGTGGCGATGCCTTTATCATTAAGTCAGATTCAGCAGCACTTGCTGCGGATATTTATATTGGTAAATTAAAGGTTGGTTTGCGTAACAATTCTGGATTTACTGATGTGACTATGGGTGGCATCTATGATGCCCATGACGGCGTAAACATAGATAACGTAGAGATTGGTTCTCTACAGGTATATAACGCTTCGTGGGGGTTAATTCCTTCCGGTGCTAATACTGGTTATATCTCTAATCTAAGAATTAATAGCTATGTAGCAATGAATGTTTATGGTAACTACTACTCACTTGTTATTGATGGTCGCTGTGTAGGTGTAAACATTGGTGAGCATCAGTGTTCTAATACATCTGGTGGAATTAGTATTGACCCTAATGCAGTTAACGTAACTCTTGGAAATGGTTTCTCTAAGGGTTCTACTAAGTCAGGGTATGCATTAGGTAGCAATTCACTTGTACATGGTAATCTCATTGCTGATGAAAATGGTGAATTTGGGGTAGACTACAAAGGTGGTGTAGGTTTTGATGCTTCTAAGATTTTAGGCTATAGCAATGCTTTTGGATTAGTATCTGCTGTTCCTACTGCATTAAATGGTAATTCACCTCAGAATAACTGGGCAGATACTGGTGCATTTATGGTACAACTCACTGGCAAAACTGTGACCGTATCTGGTTCAATGGTTGTAGGTAATGGTGCTGTTGCATACACCACATTGGATATCTGCCGACCTAAGAAACGTATACCGATTGCAGCCTGGGGCGTAGCAGGTAATGCCATGATTCCTGTTGAGTGTTACATCGAAACCAATGGTGATCTCAATGTAGTTGGGTACGCATCCATTACAGCAGGTAATCAAATTCATTTCTCCGGTCAGTATCTGATTTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
50b60b484a1f9195d2f69580ec5f08b2f81a8a10d4acfbac4b662a668abf3a25
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7302
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank