Protein

View in Explore
Genbank accession
QNI20948.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MRNPTNMRALQIDRDGQLAAPCGPQSERNPTPLPGEIRGDETTGYGEIYINGRWVRFGQDNLPLVERKNAAYTQTGSAYVPVDTSSGGFKITLDNLAVPRDHIIFFDPTHSWYKFPFTISSTHNIDGKSEDLRVNSEDGFLELFYVSSAIGYVILNGSPVTNESGFVGSVEITGSTTAQPRTEYVLTADTNCTLTLPNYAPDGAMVRFIDGVGAGLAKKLKLACSDAIIDGNLREYEIGNDYGSVTVLCRHIKGLPKWIIVSDNTYEYGYMDEERTASFQMSAQEDRTTPANTTGGAFTITLPADPRPGQKIYISDSRGTWHLNPLTVDFGVKSSYPYGSRVVLSERFGHIVAIFNAKTNRWDALSSNTYTDVHHWEDKTGTFTAAPYTGYRIQTSGSFTINLPDPANVTEGGIIRLINVSNTAQASTNLFLVKGPSGDVLEGDLLMGGSESWCFRIKKTGNTKKWYLAETNGSAIAVKTKTTSFEAYGGFSYRADFGGNAVITLDSDHTKQGERVVIYDYDGGWAGRQIRLVPQTGTLDGWGERTFSKGYVRLELERVTEGWVTVSETYQDYRNVSSTGNTPKLQNWLRGIHHYDRRTSNFTAVNGYLHNVRVGSAGVSVVLPSPSKAGDQICLVDEYGMSRRYPITVSSPLIGGAGRSYMRLAANGGMILFEGRYDEAGLRWFPVLTPDGDNKYTYPVDTGSPWPNSKVPINKAMTVSLPTNAVQGDEITIYEHQYRIFKNNVVNVRVQGTNEMMNQAGKTFRIPPEVAEVTFTFSEQYNTWTITSSSLRINTDNGKLDLVTNLTWIDTTTAHTAQANFGYSFTLQSMGAARRITLPASGIELNSVVAVTCREGTNTNGRWVGFSGGTIDGINAADYEYLRMPGEYVELVNRGNGVWITKNRTKTFSKINYSSSNNINIDFTEGENTVSRTINGTTNISVTTMPGTTQTFFFLLRQDGTGNRAINIPSSWKRSAGSEELNLLRNTYNLIQGVCIGSQVFYNVTTYI
Physico‐chemical
properties
protein length:1008 AA
molecular weight: 111121,69770 Da
isoelectric point:6,13602
aromaticity:0,10417
hydropathy:-0,37411

Domains

Domains [InterPro]
DC_1064
ATT
20–161
DC_1064 DC_1946 DC_1946 DC_0449
DC_1064
ATT
565–704
DC_1064
QNI20948.1
1 1008
Architecture
ATT
ATT
ATT
RBD
ATT 20-161 | ATT 256-375 | ATT 457-704 | RBD 739-1007 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QNI20948.1
1 1008
Domain Start End Length (AA) Confidence
N-terminal 1 378 378 0,4990
Central domain 379 586 209 0,1983
C-terminal 587 1008 421 0,7679
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-378
Central
379-586
C-terminal
587-1008

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_pir03
[NCBI] 		2762667 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QNI20948.1 [NCBI]
Genbank nucleotide accession
MT811961 [NCBI]
CDS location
range 3242 -> 6268
strand -
CDS
ATGCGTAATCCTACTAACATGCGGGCCCTACAGATTGATCGTGATGGTCAGTTGGCCGCGCCATGTGGTCCGCAATCAGAACGTAACCCAACTCCATTGCCTGGTGAAATACGAGGCGATGAAACAACCGGTTACGGCGAGATTTATATCAATGGTCGCTGGGTTCGATTCGGACAAGACAACCTGCCATTGGTTGAGCGCAAGAATGCTGCTTATACTCAAACGGGTAGTGCTTATGTTCCGGTTGATACATCCAGTGGTGGTTTTAAAATCACACTCGATAACCTAGCAGTACCTCGTGATCATATCATCTTTTTTGATCCGACGCACAGCTGGTACAAGTTTCCATTTACTATTTCATCTACACACAATATCGACGGCAAGTCAGAAGACCTGCGTGTAAACAGTGAAGATGGTTTTCTTGAGTTGTTTTATGTCAGCTCAGCAATCGGCTATGTTATCCTTAATGGCAGCCCAGTAACAAACGAATCTGGTTTTGTCGGGTCTGTTGAAATTACAGGTAGTACAACAGCACAACCTCGTACAGAGTATGTACTGACGGCTGATACTAACTGTACGCTTACATTGCCTAACTATGCCCCAGATGGTGCAATGGTTCGTTTCATCGACGGTGTGGGTGCAGGTCTTGCTAAGAAACTAAAGCTTGCTTGCTCAGACGCAATCATTGATGGCAATCTACGCGAGTACGAAATCGGCAATGACTACGGTAGCGTCACTGTATTGTGTCGTCACATCAAAGGTCTTCCTAAATGGATTATCGTAAGTGACAATACATACGAGTATGGCTACATGGATGAAGAAAGAACCGCTTCATTCCAAATGTCAGCACAAGAAGACCGTACAACGCCTGCTAATACCACAGGTGGGGCCTTTACGATCACGTTGCCTGCTGACCCACGTCCAGGACAAAAGATCTATATCTCTGACTCTCGTGGTACATGGCATCTTAATCCATTGACTGTTGATTTTGGTGTTAAGAGTTCGTACCCATATGGTTCTCGTGTTGTGTTGTCAGAACGTTTTGGTCACATCGTAGCGATCTTTAATGCAAAGACTAACCGTTGGGATGCACTGTCAAGTAACACATATACAGACGTCCATCACTGGGAAGATAAAACAGGTACATTTACCGCTGCCCCATATACCGGTTACCGTATCCAAACCTCTGGCTCGTTTACGATTAACTTGCCTGACCCGGCGAACGTAACTGAAGGCGGGATTATCCGACTTATCAACGTTTCGAATACGGCACAGGCATCAACCAACCTTTTCCTTGTTAAAGGTCCATCTGGCGATGTATTAGAGGGCGACCTTCTAATGGGTGGTAGTGAGTCTTGGTGTTTCCGTATCAAGAAAACTGGCAATACGAAGAAATGGTACCTGGCCGAAACGAACGGTTCTGCTATTGCAGTTAAAACAAAGACCACGAGCTTTGAAGCTTATGGTGGTTTCTCCTATCGTGCCGACTTCGGTGGTAATGCCGTAATCACTTTGGATTCAGATCACACAAAACAAGGTGAGCGAGTAGTCATCTATGACTATGATGGCGGCTGGGCAGGCAGACAGATTCGACTTGTTCCTCAGACTGGTACTCTCGATGGTTGGGGTGAGCGCACGTTTAGCAAAGGCTATGTTCGTCTAGAGCTGGAACGCGTAACCGAAGGCTGGGTAACGGTATCGGAAACCTATCAGGACTATCGTAACGTCTCTAGTACAGGCAATACACCAAAGCTTCAAAACTGGTTACGTGGCATTCATCATTATGATCGCCGTACGAGTAACTTCACCGCAGTGAATGGTTACTTGCATAATGTCCGTGTTGGTTCCGCTGGTGTTTCTGTTGTATTGCCGAGTCCTTCAAAAGCAGGTGACCAAATCTGTCTTGTTGATGAATATGGCATGTCTCGTCGTTATCCGATTACGGTTTCGTCGCCTTTGATTGGTGGCGCTGGTCGTTCTTATATGCGCCTCGCGGCCAATGGCGGTATGATCTTGTTTGAAGGACGCTACGATGAAGCTGGCTTGCGTTGGTTCCCTGTATTGACTCCTGATGGTGACAACAAGTATACCTATCCTGTAGATACTGGTAGTCCTTGGCCAAACTCAAAGGTACCAATCAACAAGGCCATGACTGTTTCATTGCCGACCAATGCAGTACAGGGTGACGAGATTACGATCTATGAACACCAGTACCGTATCTTTAAGAACAATGTGGTAAATGTGCGTGTTCAAGGTACGAACGAAATGATGAACCAGGCGGGCAAGACGTTCCGTATTCCGCCAGAAGTGGCCGAGGTCACATTTACGTTCAGTGAGCAGTACAATACATGGACAATCACCAGTTCGTCTTTGCGCATTAATACTGACAACGGAAAGCTTGATCTGGTAACAAACCTGACTTGGATAGATACCACAACAGCACATACTGCACAAGCGAACTTTGGGTATTCGTTTACCCTACAGAGCATGGGTGCAGCACGTCGTATTACTTTGCCTGCCTCAGGTATCGAGCTCAACTCAGTGGTCGCAGTTACCTGTCGTGAAGGTACAAACACAAACGGCCGATGGGTTGGTTTTAGTGGTGGTACAATCGACGGGATTAACGCTGCTGACTACGAGTACCTACGCATGCCTGGTGAGTACGTAGAACTCGTTAACCGAGGTAATGGTGTTTGGATCACAAAGAACCGTACGAAAACGTTTAGTAAGATTAACTACAGTTCAAGTAACAATATTAATATTGACTTTACTGAAGGTGAGAATACGGTGTCTCGTACGATCAACGGTACGACAAACATTTCCGTAACGACAATGCCTGGTACAACACAAACGTTCTTCTTCCTCTTGCGACAAGATGGCACAGGTAATCGTGCAATCAACATCCCGTCGAGTTGGAAGCGTTCAGCGGGTTCAGAAGAACTTAACTTGCTTCGTAATACCTATAACCTTATTCAAGGTGTTTGTATTGGCAGTCAGGTCTTCTATAACGTAACGACTTACATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fe7ffcf2931efbaaef25b73e0e8f4d72410704d26ca9f5139320bb154c5a9401
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7490
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and genomic characterization of a novel jumbo bacteriophage, vB_pir03 with broad host lytic activity against Vibrio harveyi N Misol,G. Jr., Katharios,P. and Kokkari,K. 2020-12-15 — GenBank