Protein

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Genbank accession
YP_007672986.1 [GenBank]
Protein name
tail collar protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MVRSKSTNYTRNKSLFGGVPGTIQIHTTPGIGINNDPNTAKFKDDLPGGFLKCDGSVHNAKDYYLLAQILGVGEECRFKKEKTTLRDPNPEIDDLGSFQLPDLGSKVIIPSGGSGDYTNVFMENKPSTTKVGVECQAVLEGQENRIFVNYTSGSSTNNGIVSWSGYNGSVGGGGAITGFLMRQVTQVDGSGLTVNTWAGSEFGDYGYRNAPGNNPNWWNNPNENITGDFRIRRNNSGNTDRLTDGVGCVMNVTIEPNQKPNGEFNRSKVRLNAYVNGQRGSGYKVDDECSVVEWDELAGTGNRIFKVTSVSAPLGAEGFQTGTTDQWFYNNAGSDFWDDTGSRYDYWEDDNDYVEENFQMQGGSGAGAVFKIRMQGDDGGRTKWKILAIINPGEGYVTGDKLSWNFNTPWRIENGHNGNISLEDDNGDGVVRVDGTSAVSLQAGMEVEGSSSDISFNGNLRYNMIRETEGYILTIDEFQAHSHRADVSVLNYTGNYDTDGQGMTGSQQNSFSANSDGFNGMDETTLNIPNGEPNHLHRLQRPTAYNQNFVYNYSPFNIPTDNMQSYIDVDIERVDVLNQVVTPFIMVHYIIKF
Physico‐chemical
properties
protein length:593 AA
molecular weight: 65239,61790 Da
isoelectric point:4,68481
aromaticity:0,10287
hydropathy:-0,63103

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007672986.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 102 102 0,4934
Central domain 103 301 200 0,6647
C-terminal 302 593 291 0,4993
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-102
Central
103-301
C-terminal
302-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-CAM1
[NCBI] 		754037 Uroviricota > Caudoviricetes > Pantevenvirales > Anaposvirus > Anaposvirus socalone
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007672986.1 [NCBI]
Genbank nucleotide accession
NC_020837 [NCBI]
CDS location
range 59593 -> 61374
strand -
CDS
ATGGTAAGGTCTAAATCTACTAACTATACAAGAAATAAGTCTTTGTTTGGTGGTGTTCCTGGCACTATCCAAATTCATACGACCCCTGGTATCGGTATCAACAATGATCCTAATACGGCAAAATTCAAGGATGATTTGCCTGGTGGATTCTTAAAGTGTGATGGGTCAGTACATAATGCAAAAGATTATTATTTGTTAGCACAGATTCTCGGTGTTGGTGAAGAGTGTAGATTCAAGAAAGAGAAAACTACTTTAAGAGACCCAAATCCAGAGATAGATGATCTTGGTAGTTTTCAGTTGCCCGATCTAGGATCTAAAGTTATTATTCCTAGTGGTGGTAGTGGAGATTATACTAATGTCTTCATGGAAAATAAACCCAGCACAACAAAGGTTGGTGTAGAGTGTCAGGCAGTCCTTGAAGGTCAGGAGAATAGAATCTTTGTCAATTATACTTCTGGTTCTTCTACCAACAATGGTATCGTTAGTTGGAGTGGATACAATGGATCTGTAGGTGGTGGTGGTGCTATTACAGGATTCTTAATGCGTCAAGTAACACAGGTGGATGGTTCTGGATTAACTGTAAATACATGGGCAGGTTCTGAATTTGGTGATTATGGTTATAGAAATGCTCCTGGGAACAATCCCAACTGGTGGAATAATCCCAATGAAAATATCACAGGAGACTTCAGAATCAGGAGAAACAATAGCGGTAATACAGATCGATTAACCGATGGTGTTGGTTGTGTCATGAATGTCACCATCGAACCAAACCAAAAACCAAATGGTGAATTCAATAGGTCGAAAGTTAGACTTAATGCATATGTCAATGGTCAGAGAGGATCTGGATATAAAGTAGATGACGAGTGTTCAGTTGTCGAGTGGGATGAACTGGCAGGAACAGGTAATAGAATTTTTAAAGTTACATCAGTTTCTGCACCTCTTGGAGCTGAAGGATTTCAAACAGGAACTACTGATCAGTGGTTCTATAATAATGCTGGTTCTGACTTTTGGGACGATACTGGAAGTCGGTATGATTATTGGGAAGATGATAATGATTATGTAGAAGAAAATTTCCAGATGCAAGGTGGGTCTGGCGCTGGTGCAGTATTCAAGATTCGTATGCAAGGCGATGACGGTGGTAGAACAAAGTGGAAGATTCTTGCCATCATCAACCCTGGTGAAGGATATGTTACTGGTGATAAACTATCCTGGAACTTCAATACACCATGGCGCATTGAAAATGGACACAATGGAAATATCTCACTCGAAGATGATAATGGTGATGGCGTAGTCAGAGTAGATGGCACTAGTGCCGTTTCATTGCAAGCTGGTATGGAAGTGGAAGGATCATCTTCAGACATTAGCTTCAATGGAAACTTGAGATATAACATGATCAGAGAGACTGAAGGTTACATCTTGACCATTGATGAGTTTCAGGCACACTCTCACCGTGCTGATGTCAGTGTATTGAATTATACTGGAAACTATGACACTGATGGTCAGGGTATGACAGGAAGTCAGCAGAATTCTTTTTCTGCCAACTCTGATGGATTTAATGGCATGGATGAAACAACCCTCAATATTCCTAATGGAGAACCAAACCACTTACATAGACTTCAGAGACCAACGGCGTACAACCAAAACTTTGTTTATAACTATTCCCCATTTAATATTCCTACTGACAACATGCAATCATACATTGACGTTGATATTGAAAGAGTTGATGTATTGAACCAGGTTGTTACTCCATTCATTATGGTTCATTACATCATCAAGTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
05ecf6c016613fe579df5b97cba38f1ef7cd502b1251e752673193f1c015637d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3941
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-CAM1 0208SB26 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank