Protein

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Genbank accession
URY10767.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MAIYRTGQASMDAQGYITGYDTKWREQLTLIRPGATIFFIDAPFQAAVISEVISDTQIRAITTGGAEIGRSNYIILLHDSITVDGLAQDVAETLRYYQSKETKIEEAIEFFKNFDLKHLEDLANQVKGDAEKTADDRAATEQLKNDTQQIKDSAVAETNQIKVDTDAIKEQTQQIKDSAITEVNSARDQGVLAVNQTKDQAVSEMNQIKGDVSNLKNEAISARDSAQQYMNGAQAANSAAETAKNGAVTARNEAEEFAKGLNAENLLRKDANLSDLSNVEIARKNLKVQSVYSKDPATNSDPGDYNSFRNPNESYELRISNNGNWLVANNQDDSVSALSIDAGGTGASNASDARKNIGLSNTDHVSFEGVNAANGFSCTVRSSPWSVGYDNASFSGGLIFNNDHGYVPIIYGGTQSTSGYRLRMGMGVLPSGNTSWPMGLIQILGDDTYWRVFALGYDGNLQTWTSESGGWTGSYDFAKNPTSDRDLKKDIVYTDGKESYDRVMQWLPTMFKYKRDDVQRYGLIAQDMLKIDPQYVKLVQGSPVFEDVIGVDDNGEEYIDRQIETDRNDDTLALDSNVMLTDMACAMVYMGGMIEKQQKEIDELKAAVAALLNK
Physico‐chemical
properties
protein length:614 AA
molecular weight: 67496,82180 Da
isoelectric point:4,58386
aromaticity:0,07818
hydropathy:-0,52427

Domains

Domains [InterPro]
DC_0253
STR
2–614
DC_0253
Coil
Unmapped
198–218
Coil IPR030392
IPR030392
CHP
483–537
IPR030392 Coil
URY10767.1
1 614
Architecture
STR
STR 2-614
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URY10767.1
1 614
Domain Start End Length (AA) Confidence
N-terminal 1 285 285 0,9861
Central domain 286 484 200 0,2426
C-terminal 485 614 129 0,9950
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-285
Central
286-484
C-terminal
485-614

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh4
[NCBI] 		2950783 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY10767.1 [NCBI]
Genbank nucleotide accession
ON528718.1 [NCBI]
CDS location
range 8327 -> 10171
strand +
CDS
ATGGCAATTTACAGAACCGGACAAGCGTCAATGGACGCTCAAGGTTATATCACTGGATACGACACGAAATGGCGAGAGCAACTAACGCTCATTCGCCCTGGTGCAACAATCTTTTTCATTGATGCACCATTTCAAGCGGCTGTGATCAGTGAAGTTATCAGCGATACACAAATACGCGCTATCACAACTGGCGGCGCTGAAATTGGTAGAAGCAACTACATTATTTTGCTGCATGACTCAATCACTGTTGATGGCCTGGCGCAAGATGTTGCGGAAACTCTTCGCTACTACCAAAGCAAAGAAACTAAGATCGAGGAAGCTATTGAATTTTTCAAAAACTTTGACCTAAAACACTTGGAAGATCTGGCTAATCAGGTTAAAGGTGATGCAGAGAAAACGGCAGATGATCGTGCTGCTACTGAACAACTGAAAAACGACACTCAACAGATAAAGGATTCTGCTGTTGCTGAAACAAACCAGATTAAAGTAGACACTGACGCAATCAAGGAGCAAACGCAACAGATTAAAGATTCTGCGATAACGGAAGTTAATTCCGCACGCGATCAAGGTGTTTTAGCTGTAAACCAGACTAAAGATCAGGCTGTTTCAGAAATGAATCAGATAAAGGGTGATGTTTCGAATCTGAAAAACGAAGCTATTTCAGCAAGGGATTCCGCACAGCAATACATGAATGGCGCTCAGGCTGCAAATAGCGCCGCTGAAACTGCAAAAAACGGAGCTGTTACTGCGCGAAATGAGGCTGAAGAATTTGCTAAAGGCCTTAACGCTGAAAATCTGCTTAGAAAAGATGCGAACCTTTCAGATCTGTCTAACGTTGAAATTGCTCGTAAAAACTTAAAAGTACAGTCCGTTTATAGTAAAGATCCAGCGACTAATTCAGATCCAGGGGACTATAATTCTTTCAGAAATCCAAATGAGTCGTATGAACTACGAATATCAAATAACGGAAATTGGTTAGTGGCTAATAATCAAGATGATTCAGTTTCTGCGCTATCTATTGATGCAGGTGGTACTGGAGCGTCGAATGCTTCTGACGCAAGGAAAAATATTGGATTAAGCAATACAGATCATGTTTCATTTGAAGGAGTTAACGCAGCAAACGGTTTCTCTTGTACCGTTAGATCTAGCCCGTGGAGTGTTGGATATGATAACGCGTCGTTTTCAGGTGGATTGATATTCAATAACGATCATGGTTACGTGCCTATAATTTACGGTGGAACACAATCTACATCAGGTTACAGATTAAGGATGGGGATGGGCGTCCTTCCAAGCGGGAATACAAGCTGGCCTATGGGATTGATTCAAATCCTCGGAGACGACACATACTGGCGCGTGTTTGCGCTAGGTTACGATGGGAATCTTCAAACCTGGACTTCAGAATCAGGCGGATGGACTGGTTCTTACGATTTTGCAAAAAATCCAACGTCTGACAGAGATCTGAAAAAAGACATCGTTTATACGGATGGAAAAGAAAGTTACGATCGCGTAATGCAATGGCTTCCGACAATGTTTAAGTATAAGCGAGATGATGTTCAGCGTTACGGACTGATTGCTCAAGACATGTTAAAAATCGATCCTCAATATGTGAAACTTGTACAAGGATCACCAGTATTTGAGGATGTGATCGGGGTTGATGACAATGGTGAAGAATACATTGATCGTCAGATTGAAACTGACAGAAATGATGATACATTGGCGCTTGATAGCAACGTTATGCTAACTGATATGGCTTGCGCTATGGTTTACATGGGAGGAATGATCGAAAAACAGCAAAAGGAGATAGACGAATTAAAGGCGGCTGTTGCTGCACTGCTCAATAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7944996c0b901078c5d90fa8266931add549018497388edfabbc234d08e7a8ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7146
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank