Protein

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UniProt accession

A0A075KQD4 [UniProt]

Protein name

Glycerophosphoryl diesterphosphodiesterase

RBP type

TSP

Evidence RBPdetect

Probability 0,90

Evidence RBPdetect2

Probability 0,51

Protein sequence

MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKALSAQLEVARIDDMNQTKSFVTSSLVDAKEDINRTVNARIAGARFIPKVFANANDLKRAYPKGQDGIFVVADTGHMWLFVNGAWKDCGVYQTPVQKNQTFTFQPSKDGFPNYDTATHVIDFRCITDSAQITLPSGDAYRIPYMAKVEVNWEFTTGVIIFDINTLSLISQSPYVPINANQYVLASYRRYPAEGDRLTWNGVLAQILLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGEVSTNDKYRLLTPNMDKVSFATVRLLNNGKVAIEGIKLLDEVSPKNSTGILPIAHRGLNSIAPEESLEAYSLAVRSGYKDIECDIYFTEDGIPVLHHDATINSIARNSNGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMANKVGWQAFDHSSLDYISSHDENAQLELLAGIITDDLIADGKKRLNGKRKVVLSVGQGVTQRLVDQAHSEGFDVYVWTVDDIDGAKKLINMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLITNLTWYKNTYINGKGDIYNLLDGMKDGEERTFAPASGETWFTAIVNLKKNTYTLSFDAKSTVNNDNLTTLMRHVEMGDNNFNCVTSVNGTPVNPDSWGDNDLKLSDSYTRYSVTYTTYSDNKPFQIGFRASSATGTVSIKNIRLTAGTDNKWSATNCMMAYLDANQGETYYARQLEEGAWLNAPMVVTNDNLDAVPSTIITDGENHTFKITIPSGGMKLFLNSNESLVPTVFKQSASSGI

Physico‐chemical properties

protein length:	878 AA
molecular weight:	97703,79110 Da
isoelectric point:	5,07432
aromaticity:	0,09226
hydropathy:	-0,31241

Domains

Domains [InterPro]

DC_1932
STR
17–543

DC_1932 DC_1520 G3DSA:2.60.120.260 DC_1292

IPR017946
STR
368–621

IPR017946 IPR008979

PTHR46211
Unmapped
371–614

PTHR46211

IPR030395
ENZ
376–621

IPR030395

IPR017946
STR
377–612

IPR017946

cd08556
ENZ
379–612

cd08556

IPR030395
ENZ
381–612

IPR030395

PS50007
ENZ
385–429

PS50007

A0A075KQD4

1 878

Architecture

STR

RBD

STR 17-809 | RBD 812-878

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1932	STR	DC_1932	17	543	Novel HMM	DC_1932	Central	Low	Positional only	18 proteins / 18 hits
IPR017946	STR	IPR017946	368	621	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
PTHR46211	Unmapped	-	371	614	PANTHER	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	-	-	-	-
IPR030395	ENZ	DC_0002	376	621	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
IPR017946	STR	IPR017946	377	612	Merged direct domain	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Central	Low	Positional only	31 proteins / 31 hits
cd08556	ENZ	DC_0002	379	612	InterPro cluster	GDPD	Central	High	Text match	63 proteins / 165 hits
IPR030395	ENZ	DC_0002	381	612	InterPro cluster	Glycerophosphodiester phosphodiesterase domain	Central	High	Text match	63 proteins / 165 hits
PS50007	ENZ	DC_0217	385	429	InterPro cluster	Phosphatidylinositol-specific phospholipase X-box domain profile.	Central	High	Text match	10 proteins / 10 hits
DC_1520	STR	DC_1520	615	668	Novel HMM	DC_1520	Central	Low	Positional only	6 proteins / 6 hits
G3DSA:2.60.120.260	STR	G3DSA:2.60.120.260	669	809	Merged direct domain	G3DSA:2.60.120.260	Central	Low	Positional only	264 proteins / 264 hits
IPR008979	STR	IPR008979	683	783	Merged direct domain	Galactose-binding-like domain superfamily	Central	Low	Positional only	24 proteins / 24 hits
DC_1292	RBD	DC_1292	812	878	Novel HMM	DC_1292	C-terminal	Low	Positional only	6 proteins / 6 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

A0A075KQD4

1 878

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	370	370	0,9390
Central domain	371	680	311	0,8179
C-terminal	681	878	197	0,1800

Note: Constraints were applied during segmentation.
Fixed 10 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-370

Central
371-680

C-terminal
681-878

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Lactobacillus phage Ld17 [NCBI]	1500733	Uroviricota > Caudoviricetes > Cequinquevirus >
Host	Lactobacillus delbrueckii [NCBI]	1584	cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

No CDS data available.

Genome Context

Gene Ontology

	Description	Category	Evidence (source)
GO:0008081	phosphoric diester hydrolase activity	Molecular Function	IEA:InterPro (UniProt)
GO:0006629	lipid metabolic process	Biological Process	IEA:InterPro (UniProt)

Tertiary structure

PDB ID

4dfb428de8b95899747c181a1e67cf7640f8c3c088b612681a9d1b5a39ead12a

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3002

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence