Protein

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Genbank accession
GENB_5c45ed704286 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,63
Protein sequence
MGRYLSNPLGRSDGPVSDVRYAVCNFGGSGGSYYRLLDGDFKPARQIPNLAPAMTPISVSAYASYGTVQPSGLGISLDPVFALGGAWSGPANTSGTSTYYDGALQQAINFGGATAAPSTSNSNYDHYTGRCGEFGHDRWNLDNRGAILLPQRSPTFGVETKTEANDAFVNGDLADGSLTLLLWNGRLYLTRRAEVETVVVSNGVRGWISRFTVPGLPNGYFGTASYNRTRNEIVILGGSSATSSSGMWLRLYRNLPVLDETSNLETILSAITPLEVAITWSGWTPAANAEAVGGATPVLTDNGDVYIGFFNAGTALYVVRLPRTGDTTFGALVNAISFGVTTSYGRHNARGSGMQVMQTRDGSTVAFYSQYYYYGAGLGVITVNKRSSSARVMYADNQTSDGRSLLHWGASGFAVAFNASSSYSAGSSGAVYGYDCAVQTATVSPAQIVLPIPNGYNTGGTYPFYVEVSV
Physico‐chemical
properties
protein length:470 AA
molecular weight: 49702,53930 Da
isoelectric point:6,10760
aromaticity:0,11489
hydropathy:-0,09362

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
GENB_5c45ed704286
1 470
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,8452
Central domain 14 219 207 0,8751
C-terminal 220 470 250 0,3528
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-219
C-terminal
220-470

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidithiobacillus phage AcaML1
[NCBI] 		1229761 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Acidithiobacillus caldus ATCC 51756
[NCBI] 		637389 Pseudomonadota > Acidithiobacillia > Acidithiobacillales > Acidithiobacillaceae > Acidithiobacillus > Acidithiobacillus caldus ATCC 51756

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
MH142220.1_CDS_[38033..39445] [NCBI]
Genbank nucleotide accession
MH142220.1 [NCBI]
CDS location
range 38033 -> 39445
strand +
CDS

  




        

        
      
    
  






  

  
  

    
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Tertiary structure


  



  

    

      
        
          
            
              

                

                  

                    

                      
PDB ID

                      
cc7a39e67b4c9cdef0daaf2059cf16039317fec64df03c73010d4805da8fc6ec

                    

                    
                      ESMFold
                    
                  

                  

                  

                    

                      Source
                      ESMFold
                    

                    

                      Method
                      ESMFold
                    

                    

                      Resolution
                      0,4268
                    

                    

                      Oligomeric State
                      monomer
                    

                    
                  

                  

                    
                      Download PDB
                    
                  

                  
                  
                  
                

                
                
                

                  

                    
                      
Model Confidence

                      

                        

                          

                          Very high
pLDDT > 90
                        

                        

                          

                          High
90 > pLDDT > 70
                        

                        

                          

                          Low
70 > pLDDT > 50
                        

                        

                          

                          Very low
pLDDT < 50