Protein

View in Explore
Genbank accession
QBQ74878.1 [GenBank]
Protein name
glycoside hydrolase family 25
RBP type
TSP
Evidence RBPdetect
Probability 0,71
Protein sequence
MRDVAPIWDAWDSGGPYVGDRKPQTRVTVQRGWRLSTSGAVLGTWNKGPARWYVEADHDLNSESELPNVVSVNMERSLDSDAGSCDIVLANTATPALGDPELPSGQFGVIGSLMPDYGSSQDAKARWGHAPNQWRDVFAPNAVLRTYQGFGGEDKPLDQALADGNVVLNGVWLVDSIDASTEGTISIKCRDMAKLLVVQQLFPPLVPEDRYPLTYRRWIYTTTTIPASESGGSTCYNDTSYGFTDPTFSAKYPSSIWHSSTDEVYGQYNTAATGHPPAEAFDISYEPATAEQLRTPGYLAHQRSYWLSESKGAAGDDVWIEMAFQNGESRKTNSIYYHGKGDHYFVKVSIFENGEWVAPETPQGGFTPAGIPFVGTIDTAPELPAAADSNRRPLPRTYNASRIRLTLTNLKYDSGGYRAGARKIMACYDETSSAGPLVFAAAGIPPGGSVPQRIGYWQVQANGQVYAFGDARTYPTNSPANTPREVVMAMAVHPGGEGYWVVDNTGRVLSAGQAEHLGDLEGYGHTDVVDIAPSPTGDGYWLLTKTGEVYTYGDATYHGNSTHTATMPSGVPAVARSIESHPATQGYWVAWTDGWVEAFNLTHYGHATDRTGFTTAEYVTAIRRTSTGDGYWVLSGGGHVQNFGDAVDLGDASTSGYAPQDWFKALTWDLIPSSKDDLGYGVVHADGKITTLGFAEFTYGSVGEGVARQRFDGDYKDYVDIVRDLVLWGGFYLHRDPQPTAQLPDVYGNLESTGAWSDDDLPADMFDKRPVIDAIKQIRDIVGFVVYCDAEGGIRFESPNWWTMGNYLIDGTPYTRMPEIDEKVTLTSLSVTRSDTSSRSKIIVANSNPLPTIAGKPPATGVISTEIVPRTAVDLRGLQVPAMWTNGAFLRKFDQKNLAELVDLKAWFARRMASVTCVANPLIDINDQVRIVERQTGEVYTHYIRSLSTSHDLQAGTFTMTLNTHWLGGAPFGVNGLYRAGDARPQGDGHWLATFGGYTTDWGTTDAGVYAYGDAPLFNRNEADSHLAVIIAMRTSPSGNGYYTLDQQGKILTYGDAVHRGQELRSAKDVIDMALTPSGEGYWVIRADGTVTTFGDAVDHGHPAASGTMTNGQPIRAEAIESHPSTTGYWVLMSDGTVHAYNVGYFGSANRDRLNPIEYFTSLRRTSNGNGYWVLSAGGVVQGFGNASELGDAERYPDANWVNGLCWTFIRGPGDTYAVVHADGATENFGFPSRSQATKGSDRFAYWPIVTDESAKQMPDASDLFTISDSLLQFLKNSGSRAAVNAAVGRFGAAPEDSTEGFNV
Physico‐chemical
properties
protein length:1304 AA
molecular weight: 141655,92190 Da
isoelectric point:4,93012
aromaticity:0,11043
hydropathy:-0,36495

Domains

Domains [InterPro]
SSF101898
RBD
462–640
SSF101898 SSF101898
QBQ74878.1
1 1304
Architecture
RBD
RBD
RBD 462-640 | RBD 1024-1208 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBQ74878.1
1 1304
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,8897
Central domain 29 263 236 0,4788
C-terminal 264 1304 1040 0,1879
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-263
C-terminal
264-1304

Taxonomy

  Name Taxonomy ID Lineage
Phage Caudovirales GX15bay
[NCBI] 		2530034 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBQ74878.1 [NCBI]
Genbank nucleotide accession
MK557849 [NCBI]
CDS location
range 42901 -> 46815
strand +
CDS
GTGCGTGACGTCGCCCCCATCTGGGACGCCTGGGATTCGGGTGGCCCGTACGTCGGGGACCGGAAACCCCAGACCCGGGTGACCGTGCAGCGCGGCTGGAGGCTCTCCACGTCCGGCGCAGTGCTCGGCACCTGGAACAAGGGTCCGGCCCGTTGGTACGTCGAAGCCGACCATGACCTGAACAGCGAATCGGAACTCCCGAACGTGGTTTCGGTGAACATGGAACGGAGCCTCGACAGCGACGCTGGATCCTGCGACATCGTCCTAGCGAACACGGCCACGCCTGCCCTTGGCGATCCCGAGCTGCCGTCCGGCCAGTTTGGGGTCATTGGCTCGTTGATGCCGGACTACGGGTCGTCACAGGACGCGAAAGCACGGTGGGGTCATGCCCCGAACCAATGGCGGGACGTGTTTGCCCCGAACGCCGTTCTTCGCACCTACCAGGGATTCGGCGGGGAAGACAAGCCACTCGACCAGGCGCTCGCCGACGGGAACGTCGTCCTCAACGGTGTGTGGCTCGTCGACTCGATCGACGCCTCCACGGAAGGGACGATCTCGATCAAGTGTCGGGACATGGCCAAGCTGCTCGTCGTGCAGCAGCTCTTCCCTCCGCTCGTGCCCGAAGACCGCTATCCGCTTACGTACCGGCGCTGGATCTACACGACGACCACGATCCCCGCATCGGAATCGGGGGGGAGCACCTGCTACAACGACACCAGCTACGGGTTCACCGACCCGACATTCTCAGCGAAGTACCCGTCATCAATCTGGCACTCCAGCACCGACGAGGTCTACGGCCAGTACAACACGGCAGCGACCGGGCATCCACCGGCCGAAGCCTTCGACATCAGCTACGAACCGGCGACTGCCGAACAGCTCCGCACGCCCGGCTACCTCGCTCATCAACGCAGCTACTGGCTCTCAGAGTCTAAAGGCGCTGCCGGCGATGATGTGTGGATCGAGATGGCATTCCAGAACGGGGAGTCCCGAAAGACGAACTCGATCTACTACCACGGAAAGGGTGACCACTACTTCGTGAAAGTGTCGATCTTCGAGAACGGGGAATGGGTCGCGCCGGAGACCCCACAGGGCGGCTTCACTCCGGCCGGCATCCCATTCGTCGGCACGATCGACACCGCCCCCGAGCTCCCGGCAGCGGCTGACTCGAACAGGCGGCCGTTGCCGCGCACGTACAACGCTTCACGGATCCGACTAACACTCACCAACCTCAAGTACGACAGCGGTGGATATCGGGCAGGGGCGCGCAAGATCATGGCCTGCTACGACGAGACGTCATCGGCTGGCCCCCTCGTGTTCGCTGCCGCTGGGATCCCTCCCGGTGGGAGCGTTCCGCAGCGCATCGGATACTGGCAGGTGCAGGCGAATGGGCAGGTCTACGCCTTCGGCGACGCCCGGACCTATCCGACGAACTCGCCGGCAAACACCCCACGCGAAGTCGTGATGGCCATGGCCGTCCACCCAGGAGGAGAAGGCTACTGGGTCGTCGACAACACGGGCCGGGTGCTCTCTGCCGGTCAAGCCGAGCATCTCGGTGACCTTGAGGGCTACGGTCACACCGATGTCGTCGACATCGCTCCATCGCCGACCGGCGACGGCTACTGGCTGCTCACCAAGACCGGTGAGGTCTACACCTATGGCGACGCCACCTACCACGGCAACTCAACCCACACCGCGACCATGCCCTCGGGGGTACCGGCAGTTGCCCGGTCGATCGAATCGCACCCAGCCACGCAGGGCTACTGGGTGGCCTGGACCGACGGGTGGGTCGAAGCATTCAACCTCACCCATTACGGTCACGCCACGGACCGTACCGGGTTCACGACCGCTGAATACGTGACCGCGATCCGACGCACCTCAACCGGCGACGGCTACTGGGTGCTCTCCGGCGGAGGACACGTCCAGAATTTCGGAGACGCCGTCGACCTCGGCGACGCCTCCACCTCGGGCTACGCCCCGCAGGACTGGTTCAAGGCGCTTACTTGGGACCTGATCCCGTCATCGAAAGACGATCTCGGCTACGGCGTTGTCCACGCTGACGGCAAGATCACCACCCTCGGATTCGCTGAGTTCACTTACGGCTCTGTTGGTGAAGGTGTCGCCCGGCAACGTTTCGACGGGGACTACAAGGACTACGTGGACATCGTCCGTGACCTCGTCTTGTGGGGCGGGTTCTACCTGCACCGAGACCCGCAACCCACCGCGCAACTTCCTGATGTCTATGGCAACCTTGAGTCGACCGGTGCCTGGTCCGACGACGACCTCCCGGCAGATATGTTCGACAAGCGACCCGTGATCGACGCCATCAAGCAGATCCGCGACATCGTCGGCTTTGTCGTGTACTGCGATGCCGAAGGCGGCATCAGGTTTGAGTCGCCCAACTGGTGGACGATGGGCAACTACCTCATCGACGGCACGCCGTACACCCGCATGCCCGAGATCGACGAGAAGGTCACCCTCACCAGTCTCAGCGTCACCCGTAGCGACACCAGCTCCCGGTCGAAGATCATTGTCGCCAACTCCAACCCGCTCCCGACCATCGCCGGCAAACCTCCAGCGACTGGGGTGATCAGCACTGAGATCGTGCCGCGCACCGCGGTCGATCTTCGTGGCCTGCAAGTCCCAGCGATGTGGACCAACGGGGCGTTTCTGCGCAAGTTCGACCAGAAGAACCTTGCCGAGCTCGTAGACCTGAAGGCCTGGTTCGCTCGCCGCATGGCTAGCGTCACCTGTGTTGCGAACCCTCTCATCGACATCAACGACCAGGTTCGCATTGTCGAACGCCAAACCGGTGAGGTGTACACCCACTACATCCGCTCACTCAGCACCTCTCACGATCTGCAGGCCGGCACGTTCACGATGACCTTGAACACGCACTGGCTCGGCGGCGCGCCGTTCGGAGTGAACGGGCTTTACCGTGCCGGCGACGCCCGACCACAGGGCGACGGGCACTGGTTGGCCACGTTCGGTGGGTACACCACCGACTGGGGCACCACGGACGCTGGCGTCTACGCCTACGGCGACGCTCCGCTGTTCAACCGCAACGAGGCCGACAGCCACCTTGCGGTGATCATCGCAATGCGAACCTCTCCGAGTGGGAACGGCTACTACACGCTTGACCAGCAAGGCAAGATTCTCACGTACGGCGACGCCGTTCACCGAGGTCAGGAACTGCGCAGTGCGAAGGACGTGATCGATATGGCGCTCACCCCCTCCGGGGAGGGTTACTGGGTGATCCGAGCCGACGGCACGGTCACCACGTTCGGCGACGCCGTCGATCACGGCCACCCCGCAGCGTCCGGCACGATGACCAACGGGCAACCGATCCGCGCTGAGGCGATCGAGTCCCACCCCTCCACGACGGGCTACTGGGTGCTCATGTCCGACGGCACCGTCCACGCGTACAACGTCGGCTACTTCGGCAGCGCGAACCGGGACCGGCTTAACCCGATCGAGTACTTCACCTCCCTACGCAGAACCAGCAACGGCAACGGCTATTGGGTCCTGTCCGCCGGGGGCGTGGTGCAAGGCTTCGGGAACGCCTCCGAACTCGGAGATGCGGAACGCTACCCGGATGCCAACTGGGTCAACGGTCTGTGCTGGACGTTCATCCGGGGGCCGGGCGACACCTACGCTGTGGTTCACGCGGATGGCGCTACCGAGAACTTCGGGTTTCCGTCTCGTTCTCAGGCCACTAAGGGCAGTGACCGCTTCGCGTATTGGCCGATTGTCACCGATGAGTCCGCCAAGCAGATGCCCGACGCATCAGATCTGTTCACCATTTCCGATTCACTGCTCCAGTTCTTGAAGAACTCCGGATCCCGCGCTGCCGTCAACGCCGCAGTCGGTCGATTCGGCGCCGCCCCCGAGGACTCCACGGAGGGCTTCAATGTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
867ba86208c69d556c21272c399401190fa300fe3aa03b320df0913e9b75a9be
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6791
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diversities and potential biogeochemical impacts of mangrove soil viruses Jin,M., Guo,X., Zhang,R., Qu,W., Gao,B. and Zeng,R. 2019 30975205 GenBank