Protein

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Genbank accession
YP_010669239.1 [GenBank]
Protein name
tail sheath
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MVIKTASPGIVVNEVDLTRGTSDAITTNIAAFVGPFQRGPVDEHVLISTEAEFQRVFGDPTDDNYEYWWTVANYLEYGGVCYVVRGDDSVGDSSGTFLQTMKNATDEIVTDPSDEPIYVKNEDDFIENWFQTASAPGRFVARNPGTWGNGLAVAVIDHGADYEMSLKTTGMLVVADGTGAATTVRFDDTTVAGDVVGDYIKVAAPAGTATLDVGDRIEAWDTSSQGVGFIISIDSDNYQILKISGDFAVGSTLTSDAGTTETGAITAAFPQGQYKLYSLDSEEDTVLNTIFVPNTVTVDAGVAYGWSATPIANAKVTTGGPAALGDTYVYNLNLDEWVLKYEPATDDLFTDGTNVFLLNAAGDWYTQQEAFAGLPWYRFAGRPGTSQNAAERGCVNDELNIIVYDGSGNFTGTKGNTLETYFGVSKLRGAVTQEGDRNYYIDAINTRSGHIFANQTLSAPEDGINTGLSAVGTQIASDIRCEFVDVKSYTLAHGVDNYNISLGELQDGYNKFIRENVPELDYILQGPAMGNLDDSVAKANFIISLCEERKDCMCFLSPPRYAVVGAFDSMTATNAIIEWAVELSSSSYAVFDSGYKYTYDRYNDQYRYIPLNGDIAGLMVNASLVAEAWYSPAGLSRGQIRNVVKLPYNPSKTQRDQLYTNRVNPVVSFPGEGHILFGDKTALGYSSAFDRINVRKLFLVIEKEIAKISRTTLFEFNDDVTRSLFKNNVNPYLRDIQAKRGMYDFLVVCDNTNNTPEVIDRNEFVADLYIKPTKSINFITLNFIATKTGVSFDESVALFRGN
Physico‐chemical
properties
protein length:802 AA
molecular weight: 87659,31810 Da
isoelectric point:4,39987
aromaticity:0,11222
hydropathy:-0,17905

Domains

Domains [InterPro]
G3DSA:3.40.50.11780
STR
26–115
G3DSA:3.40.50.11780 DC_1098 IPR035089 IPR020287
G3DSA:3.40.50.11780
STR
477–650
G3DSA:3.40.50.11780
IPR052042
Unmapped
546–788
IPR052042
YP_010669239.1
1 802
Architecture
STR
STR
TAS
TAS
STR 26-115 | STR 143-650 | TAS 651-682 | TAS 687-784 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010669239.1
1 802
Domain Start End Length (AA) Confidence
N-terminal 1 162 162 0,8083
Central domain 163 425 264 0,5476
C-terminal 426 802 376 0,0875
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-162
Central
163-425
C-terminal
426-802

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-N03
[NCBI] 		2718943 Uroviricota > Caudoviricetes > Pantevenvirales > Huanghaivirus > Huanghaivirus snothree
Host Synechococcus sp. MW02
[NCBI] 		1620844 Cyanobacteriota > Cyanophyceae > Synechococcales > Synechococcaceae > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010669239.1 [NCBI]
Genbank nucleotide accession
NC_070959 [NCBI]
CDS location
range 132343 -> 134751
strand -
CDS
ATGGTTATTAAAACCGCCTCCCCCGGTATTGTGGTCAACGAAGTTGATCTTACTAGGGGAACTAGTGATGCTATCACTACTAATATCGCCGCTTTCGTTGGTCCTTTCCAACGCGGCCCCGTGGATGAGCACGTTCTGATCAGCACTGAAGCTGAGTTCCAGCGTGTATTCGGTGATCCTACTGATGACAACTACGAGTACTGGTGGACAGTCGCTAATTACCTTGAGTACGGCGGTGTCTGCTACGTTGTTCGTGGCGACGACTCTGTAGGTGACTCTTCAGGTACGTTCCTTCAGACGATGAAGAACGCCACCGACGAGATCGTAACCGACCCATCCGACGAACCTATCTACGTCAAGAACGAAGACGACTTCATCGAGAACTGGTTCCAAACCGCTTCCGCACCCGGTCGTTTCGTTGCTCGTAACCCTGGCACCTGGGGTAACGGCCTGGCCGTCGCCGTAATCGACCACGGTGCAGACTACGAGATGAGCCTCAAGACCACCGGCATGCTTGTTGTTGCCGACGGTACTGGTGCTGCTACTACTGTCCGTTTCGACGATACCACCGTTGCTGGTGATGTTGTTGGTGACTACATCAAGGTTGCTGCCCCTGCGGGTACTGCTACTCTTGATGTTGGTGACCGCATCGAAGCTTGGGACACCTCCAGCCAAGGTGTTGGTTTCATTATCAGCATCGATTCTGACAACTACCAGATCCTCAAGATCTCTGGTGACTTTGCTGTCGGTTCAACCCTGACTTCCGACGCGGGAACCACCGAGACCGGTGCTATCACCGCTGCTTTCCCCCAAGGTCAGTACAAACTGTATAGCCTGGATAGCGAAGAGGACACCGTCCTCAACACGATCTTCGTTCCTAACACCGTCACTGTTGACGCTGGTGTTGCTTACGGCTGGTCTGCTACTCCAATTGCTAACGCTAAGGTAACCACCGGCGGCCCTGCTGCCCTCGGCGACACCTACGTTTACAACCTGAACCTCGACGAGTGGGTCCTCAAGTATGAGCCTGCTACCGATGACCTGTTCACCGACGGCACCAACGTCTTCCTGCTTAACGCTGCAGGCGACTGGTACACCCAACAGGAAGCCTTCGCTGGTCTCCCCTGGTACCGCTTCGCTGGCCGCCCTGGGACCTCCCAGAACGCTGCTGAGCGTGGTTGTGTAAACGACGAGCTGAACATCATCGTCTATGATGGTTCCGGTAACTTCACCGGCACTAAGGGTAACACCCTCGAAACCTACTTCGGTGTTTCTAAACTGCGTGGTGCTGTGACCCAAGAGGGTGACCGCAACTACTACATCGACGCCATCAACACTCGCTCTGGCCACATCTTCGCCAACCAGACTCTGTCTGCTCCCGAAGACGGCATCAACACCGGCCTTTCCGCTGTTGGTACTCAGATCGCTTCTGACATCAGGTGTGAGTTCGTTGACGTCAAGTCCTACACTCTGGCTCACGGTGTTGACAACTACAACATCTCCCTGGGTGAACTGCAGGACGGCTACAACAAGTTTATCCGTGAGAACGTTCCCGAGCTGGATTACATCCTGCAGGGTCCTGCCATGGGTAACCTCGACGACTCCGTCGCTAAGGCTAACTTCATCATCAGCCTCTGTGAAGAGCGTAAGGACTGCATGTGCTTCCTGTCGCCCCCTCGCTACGCTGTTGTTGGTGCCTTCGACTCTATGACTGCGACTAACGCTATCATTGAGTGGGCCGTCGAACTGTCTTCCAGCTCATATGCTGTGTTCGACTCCGGCTACAAGTATACCTACGACCGCTACAACGATCAGTATCGTTACATCCCTCTGAACGGCGACATCGCTGGTCTGATGGTTAACGCTTCTCTGGTTGCTGAAGCTTGGTACTCACCCGCTGGTCTGTCCCGTGGACAAATCCGTAACGTAGTTAAGCTGCCTTACAACCCCTCCAAGACCCAGCGAGACCAACTTTACACCAACCGTGTAAACCCTGTTGTTTCCTTCCCCGGCGAAGGTCACATCCTGTTCGGCGATAAGACCGCCCTCGGTTACAGCTCCGCTTTCGATCGCATCAACGTTCGTAAGCTGTTCCTGGTTATCGAGAAGGAAATCGCTAAGATCTCCCGCACGACCCTGTTCGAATTCAACGACGACGTAACTCGCTCGCTGTTTAAGAACAACGTCAACCCTTATCTCCGTGACATCCAGGCTAAGCGTGGTATGTATGACTTCCTGGTTGTTTGTGACAACACGAACAACACTCCTGAGGTCATCGACCGTAACGAGTTCGTTGCTGATCTCTACATTAAGCCCACGAAGTCGATCAACTTCATCACTCTGAACTTTATTGCCACTAAGACTGGCGTATCGTTCGATGAGTCGGTCGCTCTCTTCCGCGGCAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d3abed56e55672b1f914aa1c9819c86546028510dd9e041413b6f7bc3e325917
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2851
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Isolation and Genome Sequence of a Novel Cyanophage S-N03 from the Huanghai Sea, China Jiang,T. 2019-04-04 — GenBank