Protein

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Genbank accession
BDD79831.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,67
Protein sequence
MDNLPGYTSGVSMANYLRPDISVGGQYSVYGTITRNAQNWLVFTTGVNPYPNTNYGSYMPWMAVPYQNISDFSTRRSFFGFRIQVSSNTGGPYFVVQLKNSAATSQNLLLNTQLAANTSQFVEIMFDRANTLIVVWVDGVQVSSTFFDFNAFVAADGVAGLYFAGNANLASCQFRDFYFLDDTQDATLCDRLGPVDVRASALSAVSAPNWVSSDSQSALTDLSTVLGTTTPTLNGPTLTEPPSMDPLTFNLSNANLVPGERILAVKADISAQRNGGYVYAPQITVGYNGQTANGKKMTYPVPSTLVFNQNAFLMEKAPDNTVWTPQAVAAAVATLTP
Physico‐chemical
properties
protein length:337 AA
molecular weight: 36357,29290 Da
isoelectric point:4,56834
aromaticity:0,11573
hydropathy:-0,02136

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDD79831.1
1 337
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,0174
Central domain 20 218 200 0,3759
C-terminal 219 337 118 0,6927
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-218
C-terminal
219-337

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC9
[NCBI] 		2906467 No lineage information
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79831.1 [NCBI]
Genbank nucleotide accession
LC667451 [NCBI]
CDS location
range 241371 -> 242384
strand -
CDS
ATGGATAACCTCCCCGGCTACACCAGCGGCGTGTCGATGGCGAATTACTTGCGGCCTGACATTTCAGTCGGCGGTCAGTATTCGGTCTATGGGACGATTACGCGCAACGCGCAGAATTGGCTGGTGTTCACCACGGGGGTCAATCCGTATCCGAACACGAACTATGGTTCGTACATGCCCTGGATGGCGGTGCCGTACCAGAACATCAGCGACTTCAGTACGCGGCGTAGTTTCTTTGGCTTCCGGATACAAGTGAGTAGCAACACCGGTGGTCCGTACTTCGTGGTGCAGCTAAAGAATTCGGCAGCTACCAGTCAAAACCTGTTGCTGAATACACAGTTGGCAGCCAACACCAGCCAGTTCGTGGAGATTATGTTCGACCGAGCGAACACGCTGATCGTGGTGTGGGTAGACGGCGTTCAGGTGTCGAGTACGTTCTTCGACTTCAATGCGTTTGTGGCGGCAGATGGCGTAGCTGGGTTGTATTTCGCTGGTAACGCGAATCTTGCATCGTGCCAGTTCCGCGACTTCTACTTCTTGGACGACACGCAAGATGCGACGCTGTGCGATCGTCTGGGTCCGGTGGACGTACGTGCCAGTGCGCTGAGCGCAGTATCGGCTCCGAACTGGGTGTCGAGTGACAGTCAGTCGGCCCTTACGGACTTGTCTACGGTTCTCGGCACGACTACCCCGACGCTCAATGGTCCGACGCTGACGGAACCGCCGTCGATGGACCCGCTCACGTTTAATCTGTCTAATGCGAATCTGGTGCCTGGCGAACGGATTCTGGCTGTCAAAGCAGATATCTCGGCACAGCGTAACGGCGGTTACGTCTACGCTCCTCAGATCACGGTGGGCTACAACGGTCAAACGGCGAACGGCAAGAAGATGACGTATCCGGTCCCGAGCACGCTGGTGTTCAACCAGAATGCCTTCCTGATGGAGAAAGCACCGGATAATACCGTGTGGACCCCTCAGGCCGTGGCAGCAGCTGTCGCGACGCTCACCCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b451d372aea358ba1d07c72b52eb1909a5ddc35dc7c87c6ad8237de31da8c14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6159
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank