Protein

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Genbank accession
XCD03772.1 [GenBank]
Protein name
tail collar protein
RBP type
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MAIDQVKTINELERLPQLLGNYAAAISTGAATGSATIDQIREYVRQTLDNDFFQTGMMIPYGGNNAPQGWLKCDGSAISRETYADLFAVIGTKYGSGDGSTTFNIPNLTSPVFSGTLPVVGNGKALGIFDGERHLGLKGGAGYGISLGSGTNCYNVNVGLNIGGSIGGRENFSAGLTTQEGNSGVIVNLKNTNISMIIKY
Physico‐chemical
properties
protein length:200 AA
molecular weight: 20869,18140 Da
isoelectric point:5,33880
aromaticity:0,08000
hydropathy:-0,06700

Domains

Domains [InterPro]
DC_1413
STR
2–200
DC_1413
IPR037053
ATT
45–108
IPR037053
SSF88874
STR
50–178
SSF88874
IPR011083
ATT
56–109
IPR011083
XCD03772.1
1 200
Architecture
STR
ATT
STR
STR 2-44 | ATT 45-109 | STR 110-200
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dulem virus 29
[NCBI] 		3145747 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD03772.1 [NCBI]
Genbank nucleotide accession
PP511380 [NCBI]
CDS location
range 13191 -> 13793
strand +
CDS
ATGGCAATAGATCAGGTAAAAACAATTAACGAATTAGAGCGTTTGCCGCAACTTTTAGGCAATTATGCGGCCGCCATTTCTACAGGTGCTGCTACAGGTTCGGCAACAATCGACCAGATACGCGAGTATGTTCGGCAGACTTTAGACAATGATTTTTTCCAGACAGGAATGATGATTCCGTACGGCGGGAACAATGCCCCACAGGGTTGGCTGAAGTGTGACGGCTCCGCAATTTCGCGCGAAACATACGCCGACTTGTTCGCCGTCATCGGTACAAAATACGGATCCGGTGATGGCTCTACGACTTTTAATATCCCAAACTTAACAAGCCCTGTTTTTAGCGGGACTCTTCCTGTCGTCGGTAATGGGAAAGCGTTGGGAATATTCGACGGCGAAAGGCACCTTGGGTTAAAAGGCGGCGCTGGTTATGGTATATCCTTAGGATCTGGCACAAACTGTTATAATGTTAATGTTGGCTTGAATATAGGGGGCAGTATCGGCGGCCGCGAAAATTTTTCAGCAGGATTAACCACGCAAGAAGGCAATTCCGGCGTCATTGTAAATTTAAAAAATACAAACATTAGTATGATTATTAAGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c0fea18a03d52e7e0e60c76d2894b14ca6ddebf5a55d4e1e819192fdfcc93d01
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6988
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Diverse circular DNA viruses in blood, oral, and fecal samples of captive lemurs Paietta,E.N., Kraberger,S., Lund,M.C., Custer,J.M., Vargas,K.M., Ehmke,E.E., Yoder,A.D. and Varsani,A. 2024-07-08 — GenBank