Protein

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Genbank accession
YP_011958544.1 [GenBank]
Protein name
capsid and scaffold protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALNGTKYTAFARHRLVLEWRANQNIAGNYSTISVWLYLQSMDKWGRLDAPAIGDAKVTVEGTTQTEKASSMLNAFQKKLLLAKEWRVNHNNDGSKRITIGGSYFVNVTFTDNGVPTYYGTITIPNFSVDLNRIPRRSSLNPVPTLNLPGNLPITINRQSSTFKHNLTAWVANRDNPTLSNDAHWTYLTNLNNVDTSGSFSFTVANNKTIFTALNNRTSWQGKVKLWTIGLDDVVSQERTYKIVPPMNAQASGGKITLNVGEKINVSLSNYRSDANFTYDGVFNISGLNIPIATNSAGNTMSYTLTQTDVDNILKKIPNADSSWGQVTVTSKYSGVQYRTPWTGQRIDITIPKNKYVPSINGTPTYEDTSSVSVGLTGDNQVALQGKSNIKVTIPANFATANGYSTLKTIDVSLGGTSKTVNYSNAETVVELGAPANHTSDTLIVTVTDSRGFKSNWTKHVDIYPYENPNMYFTVTRRNNFETTTDINVNSTWSPITIGGVNKNAIQSVTYATKVAGVGTYGAETALNFTANGSMVTVKNTPIELDNTNTYDVRLSITDKFSTFTRTATVKPGNPIMFIDADNRSLFLGNAFVDNNNNELRGLLEIERDKWQDRGLVGISLNNSDISAVNGIWFSTDTSDNAGEGLHFIKSGKSRNSLTWDDYDYFYMRDNGFYVNHNTNPIFEVSDTGTMTFPTKQLWKGVVYLNDIQEILPSKKLTECRNGWVLTFSAYESGAGQPWDINQVYIHKSVLNQFNTRGFRAMIGHGTTITFKYMYITDGRIGGHAGNGIGVNSGIAIREVSEW
Physico‐chemical
properties
protein length:803 AA
molecular weight: 88771,05600 Da
isoelectric point:8,83451
aromaticity:0,10212
hydropathy:-0,37933

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011958544.1
1 803
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,0735
Central domain 141 388 249 0,8001
C-terminal 389 803 414 0,5151
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-388
C-terminal
389-803

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterococcus phage MDA2
[NCBI] 		2816459 Uroviricota > Caudoviricetes > Herelleviridae > Kochikohdavirus > Kochikohdavirus mda2
Host Enterococcus faecium
[NCBI] 		1352 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011958544.1 [NCBI]
Genbank nucleotide accession
NC_104811 [NCBI]
CDS location
range 35234 -> 37645
strand +
CDS
ATGGCTTTAAACGGAACAAAGTATACAGCCTTTGCCCGACATAGATTAGTTTTAGAGTGGCGCGCAAATCAAAACATTGCAGGGAACTACTCAACAATCAGCGTATGGCTATATCTACAATCTATGGATAAATGGGGGAGACTTGATGCTCCCGCTATTGGTGATGCCAAAGTTACCGTAGAAGGAACTACACAGACAGAAAAAGCTTCCTCTATGTTAAATGCTTTCCAAAAGAAACTATTACTAGCTAAAGAGTGGAGAGTTAACCATAATAATGACGGTTCTAAAAGAATAACTATTGGGGGTAGCTACTTTGTAAACGTTACTTTTACTGATAATGGTGTACCAACATATTACGGTACGATAACTATACCTAACTTTTCAGTAGACCTGAATAGAATACCTAGAAGAAGTTCATTAAACCCTGTCCCTACATTAAATTTACCGGGGAACTTACCAATAACAATAAATAGGCAGAGCTCCACATTCAAACATAATCTAACTGCTTGGGTGGCTAACAGAGATAACCCCACATTAAGTAATGATGCCCATTGGACGTACTTGACAAATCTTAATAATGTAGACACTAGTGGGTCATTTAGTTTTACAGTAGCAAATAACAAAACTATTTTTACTGCATTAAACAATAGGACTAGTTGGCAAGGCAAGGTTAAACTATGGACTATAGGGTTAGATGATGTAGTTAGTCAGGAGAGAACATACAAGATTGTCCCCCCAATGAATGCACAAGCATCGGGAGGTAAGATAACCTTAAATGTGGGAGAGAAAATCAATGTATCACTAAGTAACTATCGGTCTGATGCAAACTTTACTTATGATGGGGTATTTAACATTAGTGGGCTCAACATACCCATTGCTACAAATTCAGCAGGGAACACAATGTCGTATACACTAACTCAAACAGATGTAGACAATATATTGAAGAAAATACCAAATGCGGATTCCTCGTGGGGTCAAGTAACTGTAACAAGTAAGTATAGTGGAGTACAATACAGGACTCCATGGACAGGACAGAGAATAGATATAACTATACCTAAAAACAAGTATGTACCAAGCATTAATGGTACCCCTACTTATGAAGATACAAGTAGTGTCTCTGTCGGGCTTACAGGTGACAATCAGGTGGCTCTTCAAGGTAAGTCTAATATCAAAGTGACTATCCCTGCTAACTTTGCAACGGCTAATGGTTACTCTACTTTGAAAACAATTGATGTGTCTTTAGGCGGTACATCAAAAACAGTCAACTATTCAAATGCAGAAACAGTTGTAGAGTTAGGGGCTCCCGCTAACCATACATCAGACACCTTAATAGTCACAGTAACTGACAGTCGTGGGTTTAAGTCTAACTGGACAAAGCATGTAGACATTTACCCCTACGAAAACCCAAATATGTACTTTACAGTCACACGTAGAAATAACTTTGAGACAACTACAGATATTAATGTTAATAGTACATGGTCTCCTATCACTATAGGTGGTGTAAATAAAAATGCTATCCAATCAGTGACCTATGCAACAAAAGTAGCGGGTGTTGGTACTTATGGAGCAGAAACTGCTTTAAATTTTACAGCTAATGGTAGTATGGTAACAGTAAAAAATACACCAATAGAATTAGATAATACTAATACATACGACGTCAGGTTAAGCATAACTGATAAGTTTAGCACGTTTACTAGAACAGCTACTGTTAAACCGGGTAACCCTATCATGTTTATTGATGCCGATAATCGAAGTCTGTTTTTAGGTAATGCCTTTGTTGACAATAACAATAATGAGCTAAGAGGCTTATTAGAGATAGAAAGAGATAAGTGGCAGGATAGGGGTTTAGTAGGAATATCATTAAACAATAGTGATATATCAGCAGTCAACGGTATATGGTTCTCAACAGATACCTCAGATAACGCAGGTGAAGGGCTCCACTTTATTAAATCAGGTAAATCAAGAAATTCATTGACTTGGGATGATTATGATTACTTTTATATGAGAGATAACGGGTTCTATGTTAACCACAATACTAACCCTATATTTGAAGTTTCTGACACTGGTACGATGACGTTTCCTACTAAACAGCTTTGGAAAGGGGTTGTCTATTTAAACGATATACAAGAAATTTTACCTAGTAAAAAACTGACAGAATGCCGAAACGGATGGGTTTTGACCTTCTCAGCATATGAGTCAGGTGCGGGGCAACCTTGGGATATAAATCAGGTATACATCCACAAGTCTGTGTTAAACCAGTTTAATACAAGAGGATTTAGGGCTATGATAGGTCATGGAACTACGATAACATTTAAATATATGTATATAACTGACGGTCGTATAGGTGGACATGCTGGCAATGGTATAGGAGTTAACAGTGGCATTGCCATAAGGGAGGTATCAGAATGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
e6838580ef09a43825af3a66ae10e9dae5c013e32d345541740d4f74281583af
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3094
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Efficacy of Vancomycin Resistant Enterococci-specific Bacteriophages in Wax Moth Larvae Model Galleria mellonella El Haddad,L., Harb,C.P., Clark,J.R., Terwilliger,A.L., Chaftari,C., Duna,M., Youssef,S., Stibich,M., Maresso,A. and Chemaly,R.F. 2022-07-30 — GenBank