Protein

View in Explore

Genbank accession

YP_009802156.1 [GenBank]

Protein name

virion structural protein

RBP type

Evidence RBPdetect

Probability 0,69

Protein sequence

MANSKQLMGLTESELVALGIQSGIQFQPGMKKSHMVQAIMNQQASGWAEVNASMHEGVAEDDYGVDLGNSSMLSDAAHAAQMLAGAGFTETFHNIMGGGATHHVEAINAYMRQLGTNANDVWLHMPQANPNEPSRHFGQLNAYMRDTLTGNQDIMPEIPGHYSGDIMSEYATNRGGVQETYEYLAHMYVDKSGYQDRNLYDHDVSRVAQRLATQLPSGLGEVAFNAAISEGNPNAPHVSYMATLPRIGDPNIVKGVANPRQPLNASGLPFGSFGGGINSEYSLAASLSGSPGWSDASKALHKDISGAVKSLAGVYRGDTGMNPNRYQTSEYDQIMDSATRYVDVEDARSGYTNLGEPSYSGSTIRQIVENSYDKMESGVQETFDPAAAARSFHETMAAIPATGTGFTASFDSATDFNFARARRESKLIADMDAASAGPAPQDPVTYHRNIQQGTPEWLAMRENYDITGSTVGTLLGHGSYTTMHKKVTELEGLYPSSRDVNSAFSQKMFARGHASEAAARPRVEQEFGINIQEVGAITNSDYPNMMYSPDGLIGDDALWEHKNPNITKKYANLAAGEHQDYMDQIQLGMHLSGRSRTLFSQTVGSDTRSEWIDKDPTWFDRNKQQLDSIAGRREAVRNYVSENSEQFERDMASTDDEKEQTRIRNRYRRGAQNAAKGDASGFVDYEAETSTSTSVAAADGMDRMAVSVKSGILAANEEMKQRRASSGKGSSLPDEDADFDDLGAPRGWSRSRIDDALGGGGSGGGGGGRRGGGSFYDDYGRMGGALAAGVAGGSLSSLSGGAMQALMATPWGRVAGMGIGAIQIGNEAAEGLNDFVGNALDAGMTNPNEYSSMSQGMEMLGLNSQQASRINQTTHSAYNTLQNGDPSGAARITSATRGLITITDINETQGDPVALARIMQRRGQERGWSQAQIAGASQMAGLDGMARAFDRTEYSMGEAQTVVQSGRDSQYTEGAAQLEMLQGERARVLPGYNVPQMAISHGGPVIEAGADAVRQTRYGVAAVGEGWDSLTSAVKQLESGGDMNAQSTTSTAAGSMQVLSGTARDPGFGVRPAQNNSPEELERVGRDYQNAMVNYYGGDKRKAAAAYTDGPGTVDNAVKDYGINWLQHMPAQAQKRVNDLEKMGVFDGAGRFTVGSTGGNAPANVNVNITATINNKEANATATVAGGQTVTQQVNVAAGAAQMRR

Physico‐chemical properties

protein length:	1205 AA
molecular weight:	128475,94140 Da
isoelectric point:	5,10155
aromaticity:	0,06805
hydropathy:	-0,54531

Domains

Domains [InterPro]

DC_0169
ATT
1–417

DC_0169 IPR011604 G3DSA:1.10.530.10 DC_0800

IPR011335
Unmapped
448–625

IPR011335 DC_0159 IPR008258

IPR019080
STR
456–594

IPR019080 IPR023346

cd00254
ENZ
1029–1123

cd00254

YP_009802156.1

1 1205

Architecture

ATT

STR

RBD

ATT 1-417 | STR 441-1121 | RBD 1122-1142 | RBD 1146-1204 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0169	ATT	DC_0169	1	417	Novel HMM	DC_0169	N-terminal	Low	Positional only	46 proteins / 46 hits
IPR011604	STR	IPR011604	441	642	Merged direct domain	PD-(D/E)XK endonuclease-like domain superfamily	Central	Low	Positional only	46 proteins / 46 hits
IPR011335	Unmapped	-	448	625	InterPro	Restriction endonuclease type II-like	-	-	-	-
IPR019080	STR	DC_0765	456	594	InterPro cluster	YqaJ viral recombinase	Central	Low	Positional only	44 proteins / 44 hits
DC_0159	STR	DC_0159	636	1026	Novel HMM	DC_0159	Central	Low	Positional only	48 proteins / 48 hits
G3DSA:1.10.530.10	RBD	G3DSA:1.10.530.10	1021	1142	Merged direct domain	G3DSA:1.10.530.10	C-terminal	Low	Positional only	95 proteins / 95 hits
IPR008258	ENZ	DC_0010	1027	1120	InterPro cluster	Transglycosylase SLT domain 1	C-terminal	High	Text match	100 proteins / 142 hits
IPR023346	STR	IPR023346	1029	1121	Merged direct domain	Lysozyme-like domain superfamily	Central	Low	Positional only	29 proteins / 29 hits
cd00254	ENZ	DC_0010	1029	1123	InterPro cluster	cd00254	C-terminal	High	Text match	100 proteins / 142 hits
DC_0800	RBD	DC_0800	1146	1204	Novel HMM	DC_0800	C-terminal	Low	Positional only	42 proteins / 42 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Erwinia phage Faunus [NCBI]	2182346	Uroviricota > Caudoviricetes > Chaseviridae > Faunusvirus > Faunusvirus faunus
Host	Erwinia amylovora [NCBI]	552	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_009802156.1 [NCBI]

Genbank nucleotide accession

NC_047978 [NCBI]

CDS location

range 37615 -> 41232
strand +

CDS

ATGGCTAACAGCAAACAACTAATGGGATTGACCGAAAGCGAACTTGTCGCTCTTGGAATTCAATCCGGCATTCAATTTCAACCCGGCATGAAGAAGTCCCACATGGTTCAAGCAATTATGAACCAGCAGGCTTCCGGTTGGGCAGAAGTGAATGCATCAATGCACGAAGGTGTGGCGGAAGATGATTACGGGGTTGACCTCGGCAATTCCTCCATGTTATCTGATGCCGCCCATGCCGCACAAATGCTGGCTGGTGCAGGATTTACTGAAACGTTTCACAATATTATGGGCGGTGGTGCTACACACCATGTTGAAGCAATCAACGCCTACATGCGTCAACTTGGTACAAATGCCAATGATGTTTGGCTGCATATGCCCCAAGCAAATCCAAACGAACCATCAAGGCATTTTGGACAACTTAATGCATACATGCGGGATACTCTGACAGGAAATCAGGATATAATGCCTGAGATTCCGGGGCACTATTCTGGGGATATCATGAGCGAGTATGCCACCAATCGTGGTGGTGTTCAGGAAACTTATGAGTATCTTGCTCACATGTATGTTGATAAGTCCGGTTATCAAGACCGCAACTTATACGACCATGATGTTTCTCGTGTTGCACAGCGACTTGCAACCCAACTTCCATCTGGACTTGGTGAAGTTGCTTTCAATGCTGCGATAAGCGAAGGCAATCCTAATGCTCCACATGTTTCGTATATGGCAACGTTACCAAGGATTGGCGACCCGAACATCGTTAAAGGTGTTGCGAATCCTCGACAGCCACTAAATGCCTCTGGTCTTCCGTTTGGTTCTTTTGGTGGCGGCATTAATTCTGAGTATTCCCTTGCAGCATCCTTAAGTGGTTCTCCAGGATGGAGCGATGCGAGCAAAGCTCTCCACAAGGATATTAGTGGAGCAGTTAAATCTCTCGCAGGTGTGTATCGTGGCGACACTGGAATGAATCCTAATCGCTACCAAACATCTGAGTACGACCAGATAATGGACTCAGCCACTCGTTACGTTGACGTAGAAGATGCTCGTTCTGGTTATACTAATCTTGGCGAACCATCCTATTCAGGTTCCACCATTCGTCAGATTGTTGAAAACAGTTATGACAAAATGGAATCCGGCGTTCAGGAAACATTTGACCCGGCTGCTGCTGCAAGAAGCTTCCATGAAACAATGGCGGCTATTCCGGCAACAGGGACAGGATTCACTGCAAGTTTTGATTCTGCCACTGATTTTAACTTCGCTCGTGCTCGTCGTGAAAGTAAGCTGATTGCAGATATGGATGCTGCATCTGCTGGACCGGCTCCACAAGACCCTGTTACTTATCACAGGAACATTCAGCAGGGAACGCCTGAATGGTTGGCGATGCGTGAGAACTATGACATTACTGGTTCCACGGTTGGTACTCTGCTTGGGCACGGTTCATATACGACCATGCACAAGAAGGTGACAGAACTTGAAGGACTTTATCCAAGTTCTCGTGATGTTAATTCTGCATTCAGTCAAAAAATGTTTGCCAGAGGACACGCATCAGAAGCAGCTGCCCGGCCTCGTGTTGAACAAGAGTTTGGTATAAACATCCAAGAAGTTGGTGCAATCACAAACTCTGACTACCCAAACATGATGTATTCGCCTGATGGATTAATTGGCGACGATGCACTTTGGGAGCACAAGAATCCAAACATTACCAAGAAGTATGCCAACTTGGCTGCCGGTGAACATCAAGACTACATGGACCAAATTCAATTGGGCATGCATCTTAGTGGACGTTCCCGCACCCTGTTCTCTCAGACAGTTGGGAGTGATACTCGGTCTGAATGGATTGATAAAGACCCAACTTGGTTTGACAGAAATAAGCAACAACTTGATTCGATTGCTGGAAGAAGGGAAGCTGTTCGAAATTATGTCTCTGAAAACTCTGAGCAGTTTGAAAGAGATATGGCATCAACGGATGATGAAAAAGAACAAACCAGAATCCGAAACAGATATCGTCGTGGTGCACAGAATGCAGCAAAAGGTGATGCATCTGGATTTGTAGATTATGAAGCAGAGACTTCCACTTCTACTTCTGTGGCTGCTGCTGACGGTATGGACAGGATGGCCGTATCTGTTAAGTCTGGTATCTTAGCTGCCAACGAAGAAATGAAACAGCGCCGTGCTTCGTCTGGAAAAGGAAGTTCATTGCCAGATGAAGATGCTGATTTCGATGACCTTGGTGCTCCTCGTGGCTGGTCTCGTTCTCGAATTGATGATGCACTTGGTGGCGGGGGTTCCGGAGGTGGAGGTGGTGGTCGTCGTGGAGGAGGAAGTTTCTACGATGACTACGGCAGAATGGGTGGTGCATTGGCTGCTGGTGTTGCTGGAGGTTCTCTCTCCTCGCTTTCTGGTGGTGCAATGCAAGCACTCATGGCAACTCCTTGGGGCCGTGTTGCAGGAATGGGCATCGGTGCAATTCAGATTGGCAATGAAGCTGCTGAAGGTTTGAATGACTTTGTAGGAAATGCTTTGGATGCTGGCATGACCAATCCAAATGAATATTCCTCAATGTCTCAGGGCATGGAAATGTTGGGATTAAATTCTCAACAAGCTTCGAGAATAAATCAAACCACACATAGTGCCTATAACACCCTCCAGAATGGCGACCCAAGCGGCGCTGCGCGTATCACGTCTGCTACCCGTGGGTTGATAACCATCACTGACATAAACGAGACACAGGGCGACCCGGTTGCGCTGGCTCGCATTATGCAGAGAAGGGGACAGGAGCGCGGTTGGAGTCAGGCACAGATTGCAGGTGCCTCGCAGATGGCTGGACTTGACGGCATGGCGAGAGCCTTTGACCGCACAGAATACAGCATGGGCGAGGCGCAGACGGTAGTTCAGTCTGGACGTGACTCACAGTATACTGAAGGTGCAGCACAGCTAGAAATGCTACAGGGCGAACGTGCGAGGGTATTGCCTGGGTACAACGTGCCACAAATGGCAATTAGTCACGGCGGGCCTGTAATTGAAGCTGGTGCTGATGCTGTTCGCCAAACCAGATACGGAGTTGCTGCTGTTGGTGAAGGTTGGGATAGTCTAACTTCCGCTGTTAAGCAGCTTGAATCTGGCGGAGACATGAATGCCCAGTCCACAACTTCAACCGCAGCAGGCTCAATGCAGGTGTTGTCTGGTACTGCAAGAGACCCAGGATTTGGTGTTCGTCCTGCTCAGAATAATTCTCCTGAAGAATTGGAAAGAGTAGGTCGCGATTATCAAAATGCAATGGTCAATTATTATGGTGGCGATAAGCGTAAAGCTGCTGCTGCTTATACTGATGGGCCAGGCACTGTGGATAATGCCGTCAAGGATTACGGTATTAACTGGTTGCAACATATGCCAGCTCAAGCTCAGAAGCGTGTTAATGATTTAGAAAAGATGGGTGTATTTGATGGAGCAGGACGCTTCACCGTTGGTTCGACTGGAGGCAATGCCCCTGCGAACGTTAACGTAAACATCACTGCAACTATTAATAATAAAGAAGCAAACGCTACTGCAACTGTGGCAGGTGGTCAAACCGTTACCCAACAGGTTAACGTGGCTGCTGGTGCTGCGCAAATGCGTCGATAA

Genome Context

Tertiary structure

PDB ID

503c7f2362bbba049c50be9205c304fa7b9f99ccab8ba43c1d69fa69f473fc05

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,3318

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Phage therapy in agriculture - a green tech approach to combat plant pathogenic bacteria	Djurhuus,A.M., Carstens,A.B. and Hansen,L.H.	1991	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature