Protein

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Genbank accession
YP_009006776.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKVKLTDDKGLSKSYGNITVIRDIKEPGYYYINARTLATLLDKPDMESIDVLLHVLPLDSSNRVIQHIYTLSTNNNQIKTLYRFVSGNSSSEWQFITGLPSNKNAVISGTNILDISSPGIYFVMGMTGGMPKGVSSGFLDLNIDANDNRLAKLTDSETGKEYTSIKKPTGVYTEWKKELEPQDMQKYLLSSIRDDGSASFPLLVYTSDNKTFQQAVIDHIDRTGQTTFTFYVQGGVTGSPMSNSCRGLFMSDTPNTSSLHGVYNAVGTDGRNVTGSVVGSSWTFPKTSPSHKELWTGAQSFLSTGTTKNLADDISNYSYVEVYTKHKTSEKTKGNDDTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGVSFKGSTWTLVDSAVQNSKNQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50657,02400 Da
isoelectric point:6,01961
aromaticity:0,09607
hydropathy:-0,42555

Domains

Domains [InterPro]
DC_1773
STR
9–248
DC_1773 IPR057110
DC_0448
STR
195–457
DC_0448
YP_009006776.1
1 458
Architecture
STR
STR 9-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009006776.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,7178
Central domain 219 417 200 0,0355
C-terminal 418 458 40 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-417
C-terminal
418-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiSA12
[NCBI] 		1450142 Uroviricota > Caudoviricetes > Herelleviridae > Kayvirus > Kayvirus SA12
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009006776.1 [NCBI]
Genbank nucleotide accession
NC_023573.1 [NCBI]
CDS location
range 79646 -> 81022
strand +
CDS
ATGGCATTAAATTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTACTCAGGTCAATAACATTGGAGAAGAATTAACAAAAGAAAGAAATATATTTGACATTACGGATGATTTAGTTTATAATTTTAATAAATCACAAAAAGTTAAATTAACAGATGATAAGGGTTTATCTAAATCTTATGGGAATATAACTGTAATTAGGGATATAAAAGAACCAGGTTATTATTATATAAATGCAAGAACATTAGCTACATTATTAGATAAACCTGATATGGAATCAATAGATGTTTTACTCCATGTACTACCTTTAGATTCATCTAATAGAGTAATACAGCATATATATACATTGTCTACTAATAACAATCAAATTAAGACATTATATAGGTTTGTTTCGGGAAACTCTAGTTCAGAATGGCAGTTTATAACTGGATTACCTAGTAATAAAAATGCTGTTATTTCAGGAACTAATATCCTGGATATATCTTCACCAGGTATTTACTTTGTTATGGGAATGACAGGAGGAATGCCAAAAGGTGTAAGTTCGGGATTTTTAGATTTGAATATAGATGCTAATGATAATAGATTAGCTAAGTTAACTGATTCTGAAACAGGTAAAGAATACACTAGTATTAAAAAACCTACAGGTGTATACACAGAGTGGAAAAAAGAATTAGAACCTCAAGATATGCAAAAATATTTATTAAGTAGTATCAGGGATGATGGTAGTGCATCTTTCCCATTACTTGTGTACACTAGTGATAATAAGACTTTTCAACAGGCTGTTATAGACCATATAGATAGAACAGGGCAAACAACCTTTACCTTTTATGTTCAAGGTGGTGTGACAGGTTCTCCTATGTCTAATAGCTGTAGAGGATTATTCATGTCAGATACACCTAATACATCTAGTTTACATGGTGTTTATAATGCAGTAGGTACTGATGGTAGAAATGTAACAGGCTCAGTAGTAGGTAGTAGTTGGACTTTTCCTAAAACATCACCGTCACATAAAGAATTATGGACGGGAGCACAATCATTCTTATCCACAGGTACTACTAAGAATTTAGCAGATGATATTAGTAATTATTCTTATGTAGAAGTTTATACTAAACATAAGACATCAGAGAAAACTAAAGGTAATGATGATACAGGTACAATTTGTCATAAATTTTATCTAGACGGTAGTGGTACCTACGTTTGCTCAGGTACATTTGTATCAGGAGATAGAACCGATACAAAACCACCAATTACAGAATTTTATAGAGTAGGTGTATCCTTTAAAGGTTCAACATGGACTCTTGTAGATAGCGCAGTGCAAAATAGTAAAAATCAATATGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
b7c543af9081566629baef2baf66f4737ec4ca9b7fa78ba85d1b978311e3dadb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7992
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis and determination of host recognition proteins in staphylococcal Twort-like phages Takeuchi,I., Osada,K., Asakawa,H., Miyanaga,K. and Tanji,Y. 2016-10 — GenBank