Protein

View in Explore
Genbank accession
QOE32104.1 [GenBank]
Protein name
tail knob protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,67
Protein sequence
MKADGSLKSLLQGISQQPVRDRLPGQGTEQINMSADPVKGLSRRPGEDLVNQLGSTAAKGWGIFQTQDGKQWIVKITSTGPQVFDYNGTPAVVNGMGVDTYWSTDGQWSLTTVKGKTYLANSAVIVQEDSTLSTYPNKNTYSAGIVQILGGNYGKTYRLSLNGTTVATYATPDGSLAAHTAQIATAYIASQLQAALVAAGYNSGAWTTTRFDDAILLKNTNPALQFTLVISDDAGNINAKAMTSAVADIADLPRFAPENYVVRVAQEVDPEEDLWLKFVPDTAGAAFGNSGAWYETLAPGLSKGLLNSSMPRCLTWDSTAQEFTVSTVDWADREVGTNTTNPQPSFVGYPITDLSVFQSRLMVLAGPNMIGSRSKRYENFYVGSASTLVDSDPIDLTSQAAFASTLKYAIPHNKDLVIFSTKGQFILFGRSAITPSNAALVLTTSFEADLMARPQACGRNVFFATKYGRFAGIREFYTEGGTDINDTRSITQHVNKYMKGSAVHMSATSNYDHLLVHTNDERKNVYIYQFIWNDQEKIQSAWSKWVFTHDIVYSFFDEELIYFVIEIAGVHYLLRLSLDTVPEGALEYHVHLSARFDVTGVNRAFVLPFDWLADTDLSIVQGEGCPYPGLPVRILDIVYDPGEAGYVVTMREDMLGGDIVVGIRTLSEYQPTMPRVKDQDGVVITGARLKINQFLISLSETGEINGQKLSEWGNGPEVKFQGYITNSPSSLTGAPALDDHIFQMPFKGRADEGTIRLYTDSHWPMTILDVEWEGTINKRGKRIPVGD
Physico‐chemical
properties
protein length:787 AA
molecular weight: 86287,01300 Da
isoelectric point:5,09643
aromaticity:0,10165
hydropathy:-0,18679

Domains

Domains [InterPro]
IPR058003
TTP
5–783
IPR058003
QOE32104.1
1 787
Architecture
TTP
TTP 5-783 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOE32104.1
1 787
Domain Start End Length (AA) Confidence
N-terminal 1 131 131 0,9811
Central domain 132 330 200 0,1326
C-terminal 331 787 456 0,1895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-131
Central
132-330
C-terminal
331-787

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage Palo
[NCBI] 		2767573 Uroviricota > Caudoviricetes > Autographivirales > Palovirus > Palovirus palo
Host Rhizobium phaseoli
[NCBI] 		396 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOE32104.1 [NCBI]
Genbank nucleotide accession
MT708544 [NCBI]
CDS location
range 28706 -> 31069
strand +
CDS
ATGAAGGCAGATGGAAGCCTAAAGTCACTACTGCAAGGCATCAGCCAGCAGCCTGTTAGAGACAGGCTTCCCGGCCAAGGTACTGAGCAGATCAACATGAGTGCAGACCCTGTAAAGGGCCTGTCTCGTCGTCCCGGTGAGGACCTAGTTAATCAGCTAGGTTCTACCGCTGCTAAGGGCTGGGGTATCTTCCAGACCCAAGACGGTAAACAGTGGATCGTCAAGATTACTAGCACAGGTCCGCAGGTATTCGATTACAACGGTACGCCCGCAGTCGTTAACGGCATGGGCGTTGATACATACTGGAGCACAGATGGGCAGTGGTCGCTTACGACTGTCAAGGGTAAGACCTATCTAGCTAACTCCGCAGTGATAGTGCAGGAAGACAGCACACTATCTACATACCCGAACAAGAACACATACTCTGCAGGTATTGTGCAGATATTGGGTGGTAACTATGGTAAGACATATCGTCTCAGTCTCAACGGTACAACGGTGGCTACATACGCTACTCCGGACGGATCGCTGGCTGCACACACTGCCCAGATCGCTACAGCCTACATCGCTTCGCAGCTACAGGCAGCACTGGTAGCAGCAGGGTATAACTCAGGCGCATGGACTACTACGCGCTTTGATGATGCTATCTTGCTCAAGAACACAAACCCTGCACTGCAGTTTACGCTCGTTATCTCTGATGACGCGGGTAACATCAATGCTAAGGCTATGACCTCTGCAGTAGCAGACATTGCAGACCTGCCTCGCTTTGCTCCTGAGAACTACGTTGTACGCGTGGCACAGGAAGTAGACCCCGAGGAAGACCTCTGGCTTAAGTTCGTTCCTGATACAGCTGGCGCAGCATTCGGTAACTCCGGTGCATGGTATGAGACACTAGCTCCGGGCCTGAGTAAGGGCCTGCTGAATAGCTCTATGCCACGCTGCCTCACATGGGACAGCACTGCTCAGGAGTTCACAGTATCGACTGTAGATTGGGCTGACCGAGAAGTTGGTACTAACACCACCAATCCGCAACCTAGCTTCGTAGGCTACCCGATTACAGATCTTAGTGTATTCCAGTCTAGGCTGATGGTACTCGCAGGTCCGAATATGATTGGTTCGCGTAGCAAGCGGTATGAGAACTTCTATGTAGGTAGCGCGTCTACTCTGGTGGATAGTGATCCGATCGACCTGACCTCACAGGCTGCATTCGCCAGCACACTCAAGTATGCAATCCCACACAACAAGGACTTGGTTATCTTCTCTACGAAAGGCCAGTTCATTCTGTTCGGACGCTCAGCAATCACGCCTAGCAATGCTGCATTGGTGTTGACGACCTCCTTCGAGGCAGACCTTATGGCTAGGCCGCAGGCATGTGGTCGTAACGTATTCTTCGCTACTAAGTATGGACGCTTTGCGGGTATCCGCGAGTTCTACACTGAGGGCGGCACGGATATTAACGATACTCGCTCGATCACTCAGCACGTGAACAAGTACATGAAGGGTAGTGCTGTGCATATGTCCGCCACATCTAACTACGATCACCTGTTGGTGCATACTAACGATGAGCGTAAGAACGTGTATATTTACCAGTTCATCTGGAATGATCAAGAGAAGATACAGTCTGCATGGTCCAAGTGGGTGTTCACTCACGACATCGTGTACAGCTTCTTCGATGAGGAGCTTATCTACTTCGTAATTGAGATTGCTGGTGTGCACTACCTGCTACGCCTATCCTTGGATACAGTGCCAGAAGGTGCGCTTGAGTATCACGTTCATTTGTCTGCTCGCTTCGATGTGACCGGTGTAAACCGTGCGTTCGTTCTGCCCTTCGACTGGCTGGCTGATACCGACCTGTCTATCGTGCAGGGTGAGGGTTGCCCGTATCCCGGCTTGCCGGTGCGCATCCTCGATATCGTCTATGATCCCGGCGAGGCTGGCTATGTAGTCACCATGCGAGAGGATATGCTGGGCGGCGACATTGTAGTGGGTATCCGGACACTATCCGAGTATCAGCCTACGATGCCGCGTGTGAAGGATCAGGACGGCGTAGTTATCACAGGTGCACGGCTCAAGATTAATCAGTTCCTCATCTCCCTATCGGAGACTGGAGAGATTAATGGACAGAAGCTGAGTGAGTGGGGTAACGGTCCAGAGGTCAAGTTCCAAGGCTATATCACCAACTCCCCAAGCAGCCTTACAGGCGCACCCGCACTAGATGATCACATCTTCCAGATGCCCTTTAAAGGCAGGGCAGATGAAGGCACTATCCGACTGTACACAGACAGTCATTGGCCCATGACCATTCTCGATGTGGAGTGGGAAGGTACGATCAACAAGCGCGGTAAGCGTATTCCAGTAGGAGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a3517b2852c07cc10b7e69192df3100091d590d66d5e34c0894899df4c1899fb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3143
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium phaseoli phage Palo Nabhani,A., Rushing,L., Newkirk,H., Gonzalez,C., Young,R. and Liu,M. 2021-01-28 — GenBank