Protein

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Genbank accession
YP_009812583.1 [GenBank]
Protein name
colanic acid degradation
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSDIVFSAVRMPSSPFIQVGKFAPISGGDIYIGKPDTNPKDPANQVQVYLENEDLTLVPVPQPIKINQSGYPEYNGIVGRFVTQTASSMDVYDRNDVLQYSFDNLLEYDAAQMWKVIGSSTGWEYVGTPEGTLKTKLQGFVTPFDFVGREEYTSVSQAIQAMFDYAKANGKIVNAYGWSGTLESTVNPNGITIMGGTWKGTADFRLTDTLIEGAVINNLRIMHYGGDVRIRDCMFDGKPTTSKVASIMMQGVPVDGSTIEVSDSEFRNGLYGILQQGTGSTVVSGVYRNLSFYDMGGDGIELNVVQRHYDNGCLIDGIFLDNIDSTGQAPITPSNWGIGIGVAGQSPYGIDTPDANFAKNITIRNVYANKVRQIVHFEMVRDSVVENIHGDPNQNVSNGSGLTVATVLFYGSRRCSIDGVYGEPVVTGSTLAQDVRVIMLEWGTNAGVGARGPCHDMAIRNVYSKTGRFYAGIGTEKAGATNTYYIENVNVAKFSLFGVATELNMSNVHCRIFDCVGDDSSGGTASNGYLATGRTILRMVNVNATDVNGYGDQGWSRCAYSHIESVGSNVFARPYPRQGIDGGIGAKMTASNHTYIIPSPADMNATGIWDGNAFPTGREFMEGDLVVRNDGKIFVVTASGAYIPAIDEFKIKATTVGSFSIASNFPLGGNNGDMVWIYKTPLSPGCRIVIPGAGEGGNPLSTWITRGPYRVNVNDPTSEIRIDIAHAIQTATPAGTQLAAAKVVSFRTPT
Physico‐chemical
properties
protein length:750 AA
molecular weight: 80684,68640 Da
isoelectric point:5,12576
aromaticity:0,09467
hydropathy:-0,14307

Domains

Domains [InterPro]
IPR009093
ATT
1–111
IPR009093 DC_0354 IPR023882 DC_0045
IPR036730
ATT
3–110
IPR036730 IPR011050
IPR036730
ATT
9–107
IPR036730
YP_009812583.1
1 750
Architecture
ATT
ATT
STR
RBD
RBD
ATT 1-111 | ATT 124-182 | STR 183-398 | RBD 399-420 | RBD 440-750
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009812583.1
1 750
Domain Start End Length (AA) Confidence
N-terminal 1 154 154 0,9918
Central domain 155 608 455 0,9953
C-terminal 609 750 141 0,6977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-154
Central
155-608
C-terminal
609-750

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C130_2
[NCBI] 		2234093 Uroviricota > Caudoviricetes > Hungariovirus >
Host Enterobacteriaceae
[NCBI] 		543 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009812583.1 [NCBI]
Genbank nucleotide accession
NC_048067 [NCBI]
CDS location
range 20731 -> 22983
strand -
CDS
ATGAGCGATATTGTTTTTTCTGCCGTGCGTATGCCGTCCAGCCCGTTTATTCAGGTTGGCAAGTTTGCGCCTATCAGCGGCGGTGATATCTATATTGGCAAGCCCGACACCAACCCGAAGGATCCGGCAAATCAGGTGCAAGTGTACCTGGAAAATGAGGATCTAACGCTGGTGCCGGTGCCGCAGCCGATCAAAATCAACCAGAGCGGCTATCCCGAATATAACGGGATTGTTGGGCGCTTTGTGACGCAGACCGCATCAAGCATGGACGTTTATGATCGCAATGACGTGCTGCAATATTCCTTTGATAACCTTCTGGAATATGACGCGGCGCAGATGTGGAAGGTGATCGGATCGTCTACCGGCTGGGAATACGTGGGCACGCCAGAAGGCACGCTAAAAACCAAACTGCAAGGCTTTGTGACGCCGTTTGATTTTGTGGGCCGCGAAGAGTACACCAGCGTTTCACAGGCGATTCAGGCAATGTTTGACTACGCCAAAGCGAACGGGAAGATCGTCAACGCTTATGGTTGGTCTGGCACGCTTGAAAGCACGGTCAACCCGAATGGGATCACCATCATGGGGGGAACCTGGAAGGGCACCGCAGATTTTCGCCTGACTGACACCCTGATCGAAGGTGCAGTGATTAACAACCTGCGAATCATGCACTACGGCGGCGACGTAAGGATCCGCGATTGCATGTTTGACGGTAAGCCGACAACCAGCAAGGTTGCATCAATCATGATGCAGGGTGTGCCAGTGGACGGAAGCACTATTGAGGTCAGCGATTCCGAGTTTCGGAATGGCCTTTACGGCATCCTCCAGCAAGGCACGGGATCAACGGTTGTGTCCGGCGTCTACCGCAATTTGTCGTTTTACGATATGGGCGGCGACGGGATCGAGTTAAACGTAGTACAGCGCCATTATGATAATGGTTGCCTGATTGACGGCATTTTCCTTGATAACATCGACTCAACAGGCCAAGCCCCGATCACGCCGTCAAACTGGGGTATTGGGATTGGGGTTGCAGGTCAAAGCCCTTATGGCATTGATACACCTGACGCAAACTTTGCCAAAAACATTACGATCCGTAACGTTTACGCAAACAAAGTGCGTCAGATCGTACACTTCGAAATGGTTCGTGATTCCGTTGTTGAAAACATCCACGGCGACCCCAACCAGAACGTTTCGAACGGTTCCGGCCTGACGGTTGCGACGGTGCTTTTCTACGGCTCCCGCCGTTGCTCCATTGATGGGGTTTACGGTGAACCGGTAGTTACCGGCAGCACGCTTGCCCAGGATGTGCGCGTTATTATGCTTGAATGGGGCACAAATGCTGGCGTTGGCGCGCGCGGCCCTTGTCACGATATGGCGATCCGCAACGTATACAGTAAAACAGGGCGCTTTTATGCCGGTATCGGCACCGAGAAGGCAGGGGCAACTAACACGTATTACATTGAAAATGTGAACGTGGCGAAATTCTCGCTTTTCGGTGTGGCAACTGAATTGAACATGAGCAATGTTCATTGCCGGATCTTTGATTGCGTGGGTGATGATTCATCGGGCGGCACAGCTTCAAACGGCTACCTTGCCACGGGGCGCACCATCTTGCGAATGGTCAACGTTAACGCAACTGACGTGAACGGCTACGGCGATCAAGGTTGGTCACGCTGCGCCTATTCGCATATCGAAAGCGTAGGATCCAACGTCTTTGCGCGCCCATATCCGCGCCAGGGGATTGACGGCGGGATCGGTGCAAAAATGACCGCATCGAATCACACTTATATCATTCCGTCACCGGCTGATATGAACGCCACGGGCATTTGGGATGGTAACGCATTCCCCACGGGGCGTGAGTTCATGGAGGGGGATCTCGTTGTTCGAAATGACGGAAAGATCTTCGTTGTGACCGCCTCCGGCGCGTACATTCCCGCCATTGATGAATTTAAAATCAAGGCAACCACCGTGGGATCCTTCTCGATTGCTTCAAACTTTCCGCTAGGTGGCAATAATGGTGATATGGTCTGGATCTACAAAACGCCACTTTCGCCAGGGTGCCGAATTGTGATCCCTGGTGCCGGTGAAGGGGGCAATCCTCTTTCTACGTGGATCACGCGCGGGCCTTATCGTGTCAACGTGAACGATCCAACCAGTGAGATCAGGATCGATATTGCTCACGCTATCCAGACCGCCACACCGGCTGGCACCCAGCTTGCAGCGGCAAAAGTTGTGTCGTTCCGCACGCCAACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b61caea1cb7e7e5019e114a8a1c5b3c85f76108e61abf06554dc332525b4727
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of C130_2, a novel myovirus infecting pathogenic Escherichia coli and Shigella strains Svab,D., Falgenhauer,L., Rohde,M., Chakraborty,T. and Toth,I. 2018 30238162 GenBank