Protein

View in Explore
Genbank accession
ACR16499.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MALISQSIKNLKGGISQQPDILRYSDQGSKQINGFSSEVEGLQKRPPSVHVKRLTDQFGLGQKPYCHIINRDEVERYAVFFTGSNIRVFDLFTGDEKTVNAPNGLSYVTSSNPRKDLRMVTVADYTFILNRNVSTAQGTTNTPRGLAPFGHFGLVVIRGGQYGRTYRVKVNGSVEASFETPLGDQVEHAKQIDIAYIIDQLAARLINRGWAVTKGSGYFYFSKSGSVIIKSLEVEDGYNGQLAWGIINDVQKTTQLPVYAPNNYIIRVSGDPTLNQDDYYVKFDASRNVWTECPAPNIKADYNKATMPHVLIREADGTFTFKQADWTHRAAGDDDTNPYPSFIGNSINDIFFFRNRLGFLSGENVILSGSGNYFNFFPESVAVLTDTDPIDVAVSTNRISILKYAVPFSEELILWSDQAQFVLSSDGGLTPTTVRLDLTTEFEVTEQARPFGIGRGVYFVSPRAKFSSVRRFYAVQDVTQVKNAEDISAHVPSYVENGVFKMSGSSTENFLTILTEGNEQRVYFYKFLYLQEQLVQQSWSHWDFGVNCRVLYCDMIGAVMHLVIDSPSGVLMEKIEFTQNTKDYPDEPYRLYVDRKIEYTFPEGSYNDDDFKTRVKLKDIYGSTPANGQYVFISLGGVTFTFDPPAGGWQANDGLIEFDGDLRGIKFFVGEAYTFLYEFSKFLIKTTDTAGGVATEDIGRLQLRRAWVNYDKSGNFRVEVNNQGRTFTYNMTGNRLSTNELILGDESLDTGQFRYAVSGNATQVTVSLISDTPNPLSIIGVGWEGYYVRRSSGI
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88985,57710 Da
isoelectric point:5,35073
aromaticity:0,12594
hydropathy:-0,30176

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
ACR16499.1
1 794
Architecture
TTP
TTP 1-794
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ACR16499.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 149 149 0,9924
Central domain 150 348 200 0,0716
C-terminal 349 794 445 0,1540
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-149
Central
150-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage N4
[NCBI] 		644563 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Chatterjeevirus
Host Vibrio cholerae O1
[NCBI] 		127906 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ACR16499.1 [NCBI]
Genbank nucleotide accession
FJ409640 [NCBI]
CDS location
range 22977 -> 25361
strand +
CDS
ATGGCTCTTATCAGTCAAAGCATTAAGAACCTTAAAGGAGGTATCAGTCAACAACCTGATATCTTACGGTATTCCGACCAAGGTTCTAAACAGATTAATGGTTTCTCTTCAGAGGTAGAAGGTCTTCAAAAGAGACCTCCCTCAGTTCACGTAAAGAGATTAACCGACCAGTTTGGCTTAGGGCAAAAGCCTTATTGTCATATCATTAACCGTGATGAAGTAGAGCGTTATGCAGTGTTCTTTACAGGTTCAAACATTCGGGTATTCGATTTGTTTACTGGTGATGAGAAGACTGTGAATGCTCCTAACGGTTTATCTTACGTGACGTCTTCTAACCCTCGTAAAGACCTTCGTATGGTGACTGTTGCTGATTATACGTTCATTCTTAATCGTAACGTATCGACTGCTCAAGGGACAACTAACACTCCAAGGGGACTGGCTCCTTTTGGTCACTTTGGGTTGGTGGTTATCCGTGGTGGTCAATATGGTCGTACCTATCGAGTCAAAGTTAATGGAAGCGTAGAGGCATCCTTTGAGACTCCTTTAGGCGACCAAGTGGAACATGCAAAACAAATAGACATTGCGTATATCATTGACCAGTTAGCGGCACGTTTAATCAACAGGGGATGGGCTGTAACTAAAGGTTCCGGTTATTTCTATTTCTCAAAGAGTGGTTCCGTTATTATCAAATCTCTGGAAGTAGAGGATGGCTACAACGGGCAGTTGGCTTGGGGTATCATTAACGATGTTCAGAAGACAACTCAGTTACCTGTCTATGCGCCTAACAACTACATTATCCGAGTGTCTGGAGACCCTACGTTGAATCAGGATGATTACTACGTTAAGTTCGATGCTTCTCGTAACGTCTGGACTGAGTGCCCTGCTCCTAATATCAAAGCGGATTATAACAAGGCTACCATGCCTCATGTGTTGATTCGTGAAGCTGACGGTACGTTTACCTTCAAGCAAGCTGATTGGACTCACAGAGCTGCTGGTGATGACGATACGAACCCTTATCCGTCCTTCATTGGGAATAGTATTAACGATATCTTCTTCTTCCGTAACCGTTTAGGTTTCTTGAGTGGAGAGAACGTAATCCTTTCAGGTTCCGGTAATTACTTCAACTTCTTCCCTGAGTCAGTCGCGGTGTTAACCGATACAGACCCAATCGACGTAGCTGTAAGTACAAACAGAATCTCAATCCTGAAGTATGCTGTGCCATTCTCAGAAGAGTTAATCCTGTGGTCTGACCAAGCTCAGTTCGTATTAAGTTCTGATGGTGGTCTTACACCAACAACTGTACGATTAGACTTGACGACTGAATTTGAAGTGACTGAACAGGCTCGTCCTTTCGGTATTGGACGTGGTGTGTACTTCGTGTCACCTCGTGCTAAGTTCAGCTCTGTACGTCGATTCTATGCGGTTCAGGACGTTACCCAAGTGAAGAACGCAGAGGATATTTCAGCACACGTTCCTTCTTATGTTGAGAATGGTGTCTTCAAAATGTCCGGTAGTTCCACTGAGAACTTCTTAACGATTCTGACTGAAGGTAATGAACAACGAGTTTACTTCTACAAGTTCCTCTATCTGCAAGAACAGTTAGTTCAACAATCATGGTCTCATTGGGACTTTGGTGTGAACTGTCGAGTTCTGTATTGTGATATGATTGGTGCTGTGATGCATCTCGTTATTGACAGTCCGTCAGGTGTTCTTATGGAGAAGATTGAGTTCACTCAGAATACGAAAGACTATCCAGATGAGCCTTATCGTCTGTACGTTGACCGTAAGATTGAATACACGTTCCCTGAAGGTTCATACAATGATGATGACTTTAAGACTCGTGTTAAGCTCAAGGATATCTATGGCTCCACTCCTGCAAATGGACAATACGTGTTTATCTCACTTGGTGGTGTTACTTTCACGTTTGACCCTCCTGCTGGTGGTTGGCAAGCTAATGATGGTCTGATAGAGTTTGATGGTGATTTACGTGGTATTAAGTTCTTCGTTGGAGAAGCTTACACGTTCCTCTATGAGTTCTCGAAGTTCCTCATTAAGACAACCGATACGGCTGGTGGTGTGGCCACTGAAGATATCGGTAGGTTGCAACTTCGTCGTGCTTGGGTGAACTACGATAAGTCAGGTAACTTCCGAGTCGAAGTGAACAACCAAGGTCGAACCTTCACGTATAACATGACAGGGAACCGTTTGTCTACCAATGAGCTTATCCTTGGTGATGAATCTCTGGATACAGGTCAGTTCCGTTATGCGGTGTCTGGTAATGCAACTCAAGTAACTGTAAGTCTCATCTCAGATACTCCTAACCCATTATCCATCATCGGTGTAGGCTGGGAAGGATACTATGTGAGACGTTCATCTGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ea9b3a74005666a8d4db6aab0f455f4d85d04bd22a875c4bd624d74fc4a06bcf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8964
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Vibrio cholerae typing phage N4: genome sequence and its relatedness to T7 viral supergroup Das,M., Nandy,R.K., Bhowmick,T.S., Yamasaki,S., Ghosh,A., Nair,G.B. and Sarkar,B.L. 2012 21430354 GenBank