Protein

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Genbank accession
QQG32074.1 [GenBank]
Protein name
tail fiber
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATIKQIQLKRSKLAGSRPTTSQIAEGELAVNLTDRTLFTNDGAGNIIDLGFAKGGDIDGNVNHVGDYNLTGDLTVIGDIESTNINVTNILSSDAEIISNNGRITSKASAGNSAHIFLKGDEVDGTSRLNERGLIFANPQTTESGGFVGIRTTDKSSDPLSAAKLFKFTGTGDLEVPEVVKTKKVEALGIETTGTGEAIRIIYKESELAGIRGRYTTEDGGDIDHWFLGKGSTVNLNREIIFASNKYGTGLSLQEDQVEIYGKTLRASSGLSIGGVGALSILGNNAFAIGDSDTGMRWRSDGYYSTINNSRTTVDFTPDFTRINKRLVVSSMDDAGVNEVKPDNLTSLVQVMTGTDNNGNGDGRTHIGRVDQNGNFEHIFRGQGTFFVRNVGGINSTYKIVAGSATFQTDGNIAASMWGTGGLKGYIDSNIIDKGYPVGAPIPWPSATVPSGYIAMEGQAITQAANPILYSLYGANLPDMRGQTIKGLPASGRAVLSLEADDNKAHNHSGTANSTDLGTKASVSFDHGTKTTSSFDYGSKNTNSTGAHTHTLSGTAASAGAHTHAMTIYHLNTSDQRVLPGAGGPNVQGSGTYNTTSSGAHTHSISGTAASAGAHTHSVAIGAHTHTVAIGSHAHNVVLGSHTHTLTINNQGSSEVRVKNVAFKYIVRIG
Physico‐chemical
properties
protein length:670 AA
molecular weight: 70197,67610 Da
isoelectric point:6,28568
aromaticity:0,06119
hydropathy:-0,30478

Domains

Domains [InterPro]
DC_0538
STR
1–668
DC_0538
IPR051934
Unmapped
306–669
IPR051934
G3DSA:6.20.70.20
RBD
400–431
G3DSA:6.20.70.20 SSF88874 SSF88874
IPR037053
ATT
435–486
IPR037053 IPR005003 IPR005003 IPR005003 IPR005003
IPR011083
ATT
439–485
IPR011083
QQG32074.1
1 670
Architecture
STR
ATT
STR
STR 1-434 | ATT 435-486 | STR 487-669 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQG32074.1
1 670
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,7463
Central domain 110 308 200 0,3567
C-terminal 309 670 361 0,9321
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-308
C-terminal
309-670

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CkP1
[NCBI] 		2799684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter koseri
[NCBI] 		545 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG32074.1 [NCBI]
Genbank nucleotide accession
MW239124 [NCBI]
CDS location
range 156498 -> 158510
strand +
CDS
ATGGCAACTATTAAGCAAATACAATTAAAAAGAAGTAAATTAGCCGGATCTCGTCCGACCACGTCTCAAATCGCTGAAGGTGAACTTGCTGTTAACTTAACAGACCGTACTCTGTTCACTAATGATGGCGCAGGCAATATCATTGATCTTGGATTCGCAAAAGGTGGTGATATTGACGGAAACGTTAATCATGTCGGAGACTATAATTTAACCGGCGATTTGACAGTAATTGGTGATATTGAATCAACCAATATAAATGTAACAAATATTTTATCTTCTGACGCTGAAATTATTTCAAATAATGGAAGAATAACTTCTAAAGCTTCTGCTGGCAACTCAGCTCACATATTTTTAAAAGGCGATGAAGTTGATGGAACCTCAAGATTAAATGAGCGAGGCCTGATATTCGCTAATCCTCAAACAACTGAATCTGGAGGATTTGTTGGAATACGAACCACTGATAAATCTTCTGATCCATTGAGTGCTGCCAAATTATTCAAATTCACTGGTACCGGTGATTTAGAAGTTCCAGAAGTAGTAAAAACTAAAAAGGTTGAGGCTCTTGGTATTGAAACAACTGGAACTGGTGAAGCAATAAGAATAATTTACAAAGAAAGTGAATTAGCTGGTATCAGAGGAAGATATACTACCGAAGATGGCGGAGATATAGATCACTGGTTTCTTGGTAAAGGAAGCACAGTTAACTTAAACCGTGAAATTATTTTTGCTTCAAACAAATATGGAACAGGTTTAAGTTTACAAGAAGACCAAGTTGAAATATATGGAAAAACTCTCCGAGCTTCAAGTGGTTTATCTATTGGTGGAGTTGGAGCTCTAAGCATTTTAGGAAATAATGCTTTTGCTATTGGCGATAGCGATACAGGTATGAGATGGAGATCAGATGGATATTATTCTACCATAAACAATTCCAGAACAACTGTTGATTTTACTCCAGACTTCACTCGCATTAATAAACGCTTGGTTGTTTCATCGATGGACGATGCAGGTGTTAATGAAGTTAAACCAGATAACTTAACTTCGTTAGTGCAAGTAATGACTGGCACAGATAATAATGGAAATGGAGATGGTAGAACCCATATTGGACGAGTAGACCAAAACGGAAACTTTGAACATATTTTTAGAGGTCAAGGTACGTTTTTTGTTCGTAACGTAGGAGGTATAAATTCTACTTACAAAATTGTTGCTGGTTCTGCGACTTTTCAAACTGATGGTAATATAGCTGCATCTATGTGGGGAACTGGTGGTTTAAAAGGCTACATTGATTCAAACATCATTGATAAAGGATATCCAGTAGGAGCTCCGATTCCATGGCCATCGGCAACTGTACCTAGTGGTTATATTGCTATGGAAGGACAAGCTATAACGCAAGCTGCTAACCCGATATTGTATTCTTTGTATGGTGCTAATCTTCCCGATATGCGTGGTCAAACTATCAAAGGCTTACCAGCATCAGGTCGTGCGGTTCTTAGTTTAGAAGCTGATGATAATAAAGCTCATAACCACAGCGGAACTGCAAACTCTACAGATCTTGGAACAAAAGCTAGCGTATCGTTTGATCATGGTACTAAAACTACTTCATCATTTGATTACGGAAGTAAAAACACTAATAGTACCGGTGCTCACACCCATACATTAAGTGGTACTGCTGCTTCAGCTGGTGCACATACGCACGCAATGACTATTTACCATTTGAACACTTCTGATCAGAGAGTTCTTCCGGGCGCAGGTGGTCCTAACGTACAAGGTAGTGGTACTTATAATACTACTTCATCCGGTGCACATACGCACTCTATTTCTGGTACTGCTGCTTCAGCTGGTGCACATACGCACTCCGTTGCAATTGGAGCTCACACTCATACAGTTGCAATTGGTTCGCATGCGCATAACGTTGTATTAGGGTCTCATACTCATACTCTTACAATAAACAATCAAGGTTCATCTGAAGTTCGTGTCAAAAACGTAGCGTTTAAATATATTGTAAGAATCGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c45fd980eece54e8de3da7f796e8840746346ffd4104ab84a82d2a918e488cd0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6236
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
CkP1, a S16-like broad-host-range myovirus, recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres Oliveira,H., Santos,S., Pires,D., Pinto,G., Carrera,J., Briers,Y., Schmelcher,M., Dotsch,A. and Azeredo,J. 2022 — GenBank