Protein

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Genbank accession
YP_007673831.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
TF
Evidence RBPdetect2
Probability 0,82
Protein sequence
MATRKISDLTLLSVGEVSSSDTLLLLDNSDPTDQNKRSAVGSIFTAVPSGTYTAPGVRFEGKTSTGLFSSSQGQVGLALGNSRLNLQKVGTTLNIEARDDADQNLDFKLSAQGTGKIRLGSVLAINDLNFIVPNSVDETKVAKFSSINLTAGLTNVYSFPSNEGLTNTTDELVTLKATQTLENKTIVSPTFTGTLSVVDILSSGSTTLGDDAADSLTVNAAATFAASTTFANSLIINQGATVTGDLNLNNHLEMVDDKTIKMGTDDDLQLNYSNTNDISYFTSSATNGLRVSSDILGLYKGNHTDLYLYADSTNTIIYHDNSARITTSATGISIGGAIDAVTSITGSGDITIATDKFTLASATGDAVFGGNITGGGNVTATAGTDFQLGSTASAKLGIGRAATTYNLEVEGSIYSTGSTIIAGNGSAGKFILQKGAAAIGTHFTNNVGTDEMILDSNANLGIGKSPSQRLDVSGSANVDGDIIVTTTDPSTNTGGSIAARQVVLTNPLTGQSATLDASSTGGVSRARVFFANM
Physico‐chemical
properties
protein length:533 AA
molecular weight: 54722,73140 Da
isoelectric point:4,51526
aromaticity:0,05253
hydropathy:-0,03171

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007673831.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 134 134 0,6885
Central domain 135 333 200 0,1112
C-terminal 334 533 199 0,9037
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-134
Central
135-333
C-terminal
334-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage MED4-213
[NCBI] 		889956 Uroviricota > Caudoviricetes > Eurybiavirus >
Host Prochlorococcus
[NCBI] 		1218 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673831.1 [NCBI]
Genbank nucleotide accession
NC_020845 [NCBI]
CDS location
range 92707 -> 94308
strand -
CDS
GTGGCAACTCGTAAGATATCCGATTTGACATTATTAAGTGTAGGAGAGGTATCATCATCTGATACTTTACTATTACTAGATAACTCAGATCCAACCGATCAAAATAAAAGATCTGCAGTAGGTAGTATATTTACTGCTGTTCCTTCTGGAACTTATACAGCACCTGGCGTTCGTTTTGAGGGCAAAACTTCTACTGGTCTGTTTTCTTCTTCACAAGGACAGGTTGGTCTTGCGTTGGGCAACTCTAGACTCAACTTACAAAAAGTTGGAACCACTCTTAATATTGAAGCAAGAGACGATGCTGATCAAAATTTAGACTTCAAACTATCTGCACAGGGAACTGGTAAGATACGTCTGGGGTCTGTTTTAGCAATTAATGATCTCAATTTTATTGTACCTAACTCAGTTGATGAAACAAAGGTAGCAAAATTCAGTTCAATAAACCTAACAGCGGGTTTGACTAACGTATATTCATTTCCATCTAACGAAGGATTGACTAATACAACTGATGAACTTGTAACACTTAAAGCAACTCAAACACTAGAAAATAAAACTATTGTATCACCAACATTTACTGGAACTTTATCAGTAGTAGACATTCTTTCTAGTGGTAGCACAACACTAGGTGATGATGCTGCTGATTCTTTAACTGTTAATGCTGCTGCTACATTTGCTGCATCAACAACATTTGCTAACTCATTGATTATCAATCAAGGTGCAACTGTCACTGGTGATCTGAACCTAAACAATCATCTTGAAATGGTTGATGATAAGACTATTAAGATGGGAACAGATGATGATTTACAATTAAATTATTCAAATACTAATGATATATCATATTTTACTAGTAGTGCTACAAATGGTCTAAGAGTATCAAGTGATATATTAGGACTTTATAAGGGAAATCATACTGATCTTTACCTTTATGCTGATTCTACCAATACTATCATATATCATGACAATTCTGCACGTATTACAACAAGTGCAACAGGTATTTCAATTGGAGGTGCTATAGATGCTGTCACATCTATCACAGGCAGTGGCGACATCACTATTGCTACTGATAAGTTTACTCTGGCTAGTGCTACTGGCGACGCTGTATTCGGAGGCAACATTACAGGTGGCGGGAACGTTACCGCTACTGCAGGAACTGACTTTCAGTTAGGTTCCACTGCTTCTGCCAAACTAGGTATTGGTAGAGCAGCAACTACATATAACCTAGAAGTTGAGGGGTCTATATATTCTACAGGCTCTACTATCATTGCAGGAAATGGATCTGCGGGTAAATTCATCCTACAAAAGGGTGCTGCTGCTATCGGAACACATTTTACTAACAATGTTGGAACTGATGAGATGATACTTGACTCCAATGCTAATCTTGGTATTGGTAAATCACCTAGTCAGAGACTTGACGTATCTGGTAGTGCAAATGTTGATGGTGATATAATAGTAACCACAACTGACCCATCAACCAATACTGGTGGTTCAATTGCTGCTAGGCAGGTAGTTCTCACTAATCCCCTAACAGGTCAATCTGCAACACTAGATGCTTCCTCTACTGGAGGAGTTTCCAGAGCAAGAGTGTTCTTTGCTAACATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9f3493714f9f13ce451907ac0dabfc801836f6fcb3c30792cb7db9e565b445bd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6384
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage MED4-213 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank