Protein

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Genbank accession
YP_009221626.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MILDNSPADSWIRITGVIVTYNNTLYQVVDKETNKKYIYWDADNPGTLKVSNVRLPEGNTQFLVVVNDNGKHTEVPINSSIFNISFDGNSRKNTEEQIWGLYETDEEHNEKFVVIEKDIDGIHQTVLEVQEDASHIKENMSLIDQRAENVNILVKEVTKNFGGSQENIILRENINKAIIKLNTDLGTFSSNMSNYFNDNEITDEEKEKIDIELNLLDTDKTSLYIELQKLIDRTTGVDLVAINTSKTALNAASTNLNSIINSVISDGIITPSDRILAINANAQYNLKINELKNTVDKIYITGMGGSISEEFSQINATAKEIKLEVAKVDGATKTNAAEIKLTKDDITMMVTRNNSGSIVGIKPDKIEFGFNDISNYVEISRSGLTVNQGAIACDILTTPSGHEPIIRLFGSSRSGFAIDARQSDGSSQASAIRLKYDSNNYFWVGYDTAEIYVDGEEHFIVERDDTFVRCGGATFTFTNGDSLGVGYSFYPERSVTDLGCERYKWRYLYARSTLSESDKKFKENIVYIKDIKNRTRSSITPTPFLDFIRDDFKPATFDYIAEKDRTIADSQIGFIANDFKDSYVGKTFLYDYGEENGLMFSPSGYTTVVATALQEEIQKREELEMIINELNEKINNLGGY
Physico‐chemical
properties
protein length:640 AA
molecular weight: 71899,34620 Da
isoelectric point:4,69373
aromaticity:0,09063
hydropathy:-0,41281

Domains

Domains [InterPro]
DC_1272
STR
1–640
DC_1272
IPR030392
CHP
517–627
IPR030392
Coil
Unmapped
613–633
Coil
YP_009221626.1
1 640
Architecture
STR
STR 1-640
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009221626.1
1 640
Domain Start End Length (AA) Confidence
N-terminal 1 547 547 0,6605
Central domain 548 629 83 0,2463
C-terminal 630 640 10 0,8996
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-547
Central
548-629
C-terminal
630-640

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCD211
[NCBI] 		1582152 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009221626.1 [NCBI]
Genbank nucleotide accession
NC_029048 [NCBI]
CDS location
range 39118 -> 41040
strand +
CDS
TTGATATTGGATAATTCACCAGCAGATTCATGGATTAGAATTACTGGAGTAATTGTTACTTATAATAACACACTTTATCAGGTAGTAGATAAAGAAACAAATAAAAAATATATATACTGGGATGCTGATAATCCAGGGACATTGAAAGTTTCTAATGTAAGATTACCAGAAGGAAATACACAATTTTTAGTAGTTGTAAATGATAATGGAAAGCATACAGAAGTTCCTATAAACTCATCAATATTCAATATATCTTTTGATGGTAATTCAAGAAAAAACACTGAAGAACAAATCTGGGGATTGTATGAAACTGATGAAGAACACAATGAAAAGTTTGTAGTTATTGAAAAAGACATAGATGGAATACATCAAACAGTTTTAGAAGTACAAGAAGATGCATCTCATATAAAAGAAAATATGTCTCTTATAGACCAGAGAGCTGAAAATGTAAATATATTAGTAAAAGAAGTAACTAAAAATTTTGGTGGTTCACAAGAAAATATAATATTAAGAGAAAACATAAATAAAGCTATAATTAAGTTAAATACAGACTTAGGAACATTTAGCTCTAATATGTCTAATTATTTTAACGATAATGAGATTACAGATGAAGAAAAAGAAAAGATTGATATTGAACTTAATTTATTAGATACAGACAAAACAAGTTTATATATAGAGCTACAAAAACTTATTGATAGAACTACTGGAGTAGACTTAGTAGCAATAAATACTTCAAAAACAGCATTGAATGCAGCAAGTACCAATCTAAACTCTATAATCAATTCAGTTATTTCAGATGGTATAATTACACCTTCAGACAGAATTTTAGCTATAAATGCAAATGCTCAATATAACTTAAAGATAAATGAACTTAAAAATACAGTCGATAAAATTTACATAACAGGTATGGGTGGAAGTATATCAGAGGAATTTTCACAGATAAATGCTACAGCTAAAGAAATAAAATTAGAAGTAGCAAAAGTTGATGGTGCAACTAAAACAAATGCTGCTGAAATTAAATTAACTAAAGATGATATAACCATGATGGTTACAAGGAATAACTCTGGCTCAATTGTAGGAATTAAACCTGATAAAATTGAATTTGGATTTAATGATATATCAAATTATGTAGAGATAAGCAGGAGTGGTCTAACAGTAAATCAAGGAGCTATAGCATGTGATATATTAACTACTCCATCTGGACATGAACCAATAATCAGATTATTTGGAAGTAGCAGGTCTGGATTTGCAATAGATGCAAGACAATCAGATGGTTCTAGTCAAGCCTCAGCAATAAGATTAAAATATGATAGCAATAATTATTTTTGGGTAGGATATGATACTGCTGAGATTTATGTTGATGGAGAAGAACACTTTATTGTTGAAAGAGATGATACTTTTGTAAGATGTGGTGGAGCTACTTTTACATTTACAAATGGAGATAGTTTAGGTGTAGGATATTCATTTTATCCAGAGCGTTCTGTAACTGATTTAGGTTGTGAGCGTTATAAATGGAGATATTTATATGCTCGTTCTACTCTGAGTGAATCTGATAAAAAGTTTAAAGAGAATATAGTATACATAAAAGATATTAAGAATAGAACTCGTTCAAGTATCACTCCAACACCATTTTTAGATTTTATAAGAGATGATTTTAAACCAGCAACATTTGATTATATAGCAGAAAAAGATAGGACAATTGCAGATAGTCAAATAGGGTTTATAGCTAATGATTTTAAAGATAGTTATGTTGGAAAAACATTTCTATATGACTATGGAGAAGAAAATGGATTAATGTTTAGCCCATCTGGTTATACAACTGTTGTAGCAACTGCACTTCAAGAAGAAATACAAAAAAGAGAAGAATTAGAGATGATAATTAATGAATTAAACGAGAAAATTAATAATTTAGGAGGATATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d590e3f34777d8d6b985d4e539ed5093cf204a072f3096d7be2a8f67f294fa43
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6733
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
High prevalence and genetic diversity of large phiCD211-like prophages in Clostridium difficile Garneau,J.R., Sekulovic,O., Dupuy,B., Soutourina,O., Monot,M. and Fortier,L.C. 2018-02 — GenBank