Protein

View in Explore
Genbank accession
YP_009624336.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
Protein sequence
MPPAIIAAAIAVGATAAATAGYIALTTALYITIAATVAGALLTKTNIPAIGNYTSQSERKQVLRAAVAPQVLVYGRTVISGLLFFAEEQPGGQDQKEWVHLAIALCGHEIDRVERIWLGEELITSFSSDFVTYQINNNLTAADPFMLANCPSWKPDMIGTGITWMRLSLCYDGEIFPAGIPNVKAEIFGKRVYDPRDGATRWSSNAALCVRDYYRTVLGVPDEDIDDPLFITAANICDEDVAAGSSAEKRYTVNGAIDASDACAGVLDDMHLACGGEPTYFAGKHGILVGAYYGPATMVIDEGQIIGDVKITPETSYNDKVNIVGGTFVDAAQDFVEADFPPVVIQEWIDEDGNEFQQDVKYRFVISEFHAQRLAQITLARKRLGRTVELNLNMFGYRYRPGYYVLLNISVLGIVNHEFRVTDWKLNATGGITVTLREETPQVWLDAIGKPIDRPDLTTLPSSQVPAPYDLAYEVLKIGDVVQGELTWKNAGQIAYNNVLIRQNGEMVYTVQVPGESVRLNGLVRGTYTAAVVAVSVMGAKSPESYLEFNIQAPAKPTGCEVQNGYFAITLIPRSADISEVSMTYDFWTSGETRLSSASTEFVEANANHEGQGRQWNDNNLLNDHTYYWYVRAVNAFGASEFLEVPALVTADNAALLDIINENIQKTEAFANLTQSADDLWAAVIENALTHEGIVTRQYKEITALDVKLSASITEVSTLVVTNDKAYAEKFTQLNASVSGMQGQVNTISATVQETSSAYADLNGKLSAQWGIKLQVNTATGSRYVAGVQLGLEANGGTVQSLFLVSANTFGVYNPTNNGQSLAFAIQNGQMFVNEAFIPYASITLAKLGSWYSANYVSGQTGTIMRADGSFELNGVTAGQGRLVINNNRIVVFDTSNNPVCVMGARL
Physico‐chemical
properties
protein length:907 AA
molecular weight: 98384,69330 Da
isoelectric point:4,68202
aromaticity:0,09372
hydropathy:-0,00254

Domains

Domains [InterPro]
DC_0754
STR
1–906
DC_0754
IPR057587
ATT
556–660
IPR057587 IPR053171
IPR015406
RBD
752–888
IPR015406
YP_009624336.1
1 907
Architecture
STR
ATT
STR
STR 1-555 | ATT 556-660 | STR 661-906 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009624336.1
1 907
Domain Start End Length (AA) Confidence
N-terminal 1 120 120 0,7126
Central domain 121 319 200 0,2433
C-terminal 320 907 587 0,0967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-120
Central
121-319
C-terminal
320-907

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagS_Vid5
[NCBI] 		2099652 Uroviricota > Caudoviricetes > Vidquintavirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009624336.1 [NCBI]
Genbank nucleotide accession
NC_042120 [NCBI]
CDS location
range 18168 -> 20891
strand +
CDS
ATGCCACCAGCCATTATTGCCGCTGCTATCGCTGTAGGTGCCACTGCTGCCGCGACCGCCGGTTACATCGCACTAACGACCGCCCTTTATATTACAATCGCTGCAACTGTCGCAGGTGCGCTTTTAACGAAGACCAACATCCCAGCGATCGGGAACTACACATCCCAGTCTGAACGTAAGCAGGTGCTAAGGGCAGCGGTTGCACCGCAAGTACTTGTGTATGGCCGCACTGTTATTTCGGGATTGCTTTTCTTTGCGGAGGAACAACCGGGCGGTCAGGACCAGAAAGAATGGGTACATCTTGCGATAGCCCTGTGTGGTCATGAAATAGACCGTGTGGAACGTATATGGTTAGGTGAGGAATTGATCACCAGCTTCTCCTCCGACTTCGTCACATACCAGATTAATAACAATCTTACAGCAGCTGACCCGTTTATGCTTGCCAACTGTCCATCCTGGAAACCAGACATGATCGGTACTGGCATAACTTGGATGCGTTTAAGCTTGTGTTACGATGGTGAGATTTTCCCTGCTGGTATCCCTAACGTTAAAGCTGAGATTTTTGGTAAGCGTGTGTATGATCCGCGTGACGGTGCAACACGGTGGAGCTCTAACGCCGCTTTGTGTGTGCGCGATTATTACAGGACGGTGCTGGGTGTACCGGATGAGGATATAGACGATCCCTTGTTTATCACCGCTGCTAACATCTGCGATGAAGACGTTGCTGCTGGTAGTAGTGCGGAAAAGCGTTATACGGTCAACGGTGCAATAGACGCTAGCGATGCCTGTGCTGGGGTGCTGGACGATATGCATCTGGCTTGCGGTGGCGAGCCTACTTACTTTGCAGGGAAGCACGGAATCCTTGTGGGGGCGTATTATGGTCCAGCAACGATGGTCATTGACGAAGGTCAGATTATTGGCGATGTTAAGATTACTCCTGAAACGTCTTATAACGATAAAGTTAACATCGTCGGGGGTACGTTTGTCGACGCTGCCCAGGACTTCGTGGAAGCCGATTTCCCCCCTGTCGTCATACAGGAGTGGATCGACGAAGACGGGAACGAATTCCAACAAGACGTAAAGTACCGTTTTGTTATAAGTGAATTTCATGCGCAGCGCCTTGCACAGATTACCCTTGCGCGTAAGCGGTTGGGCCGCACGGTGGAGCTCAACCTTAACATGTTCGGCTATCGCTACCGCCCAGGTTATTACGTGTTGCTTAATATCAGTGTCCTGGGGATTGTGAACCATGAGTTCCGCGTCACGGACTGGAAACTTAACGCGACCGGCGGTATCACTGTAACGCTGCGCGAAGAAACTCCACAAGTGTGGTTAGATGCTATTGGTAAGCCTATCGATAGACCTGATCTTACTACCCTGCCTAGCTCACAAGTACCTGCACCATACGACCTTGCGTACGAAGTGCTTAAGATCGGTGACGTTGTTCAGGGTGAACTTACTTGGAAGAACGCGGGTCAAATTGCGTACAACAATGTTCTAATCAGACAGAACGGCGAGATGGTTTACACTGTCCAGGTTCCTGGTGAGAGTGTGCGCTTAAACGGGTTAGTGCGCGGTACGTACACAGCCGCTGTGGTCGCTGTTAGCGTCATGGGTGCTAAGTCCCCTGAGTCCTACCTTGAGTTTAATATACAAGCGCCTGCTAAGCCTACAGGGTGCGAGGTTCAGAACGGTTACTTTGCTATTACGCTTATCCCGCGCAGTGCAGATATTTCCGAAGTGAGCATGACTTACGATTTTTGGACAAGCGGGGAAACAAGATTAAGTAGCGCGTCTACAGAATTTGTGGAAGCTAATGCGAACCACGAAGGTCAGGGTCGTCAGTGGAACGATAATAACCTGCTTAATGACCACACCTATTACTGGTATGTTCGTGCGGTCAATGCTTTCGGTGCTTCGGAGTTCTTAGAGGTTCCAGCACTTGTCACCGCGGACAACGCTGCTTTGTTAGATATCATCAACGAGAACATTCAAAAAACTGAGGCGTTTGCTAACCTTACACAATCAGCGGATGACTTGTGGGCTGCCGTAATAGAGAACGCGTTAACACACGAGGGTATCGTTACACGTCAGTATAAAGAGATCACTGCTTTAGATGTGAAACTTAGTGCTAGCATAACGGAAGTAAGTACTTTAGTTGTTACTAACGATAAAGCTTATGCGGAAAAGTTCACACAGTTAAACGCATCCGTAAGCGGTATGCAGGGACAGGTTAATACTATCTCCGCAACTGTACAGGAGACATCTAGCGCCTACGCGGATCTTAATGGTAAACTGTCTGCGCAATGGGGTATTAAGTTGCAGGTGAACACCGCAACGGGCTCCCGTTATGTTGCAGGGGTACAACTGGGTCTGGAAGCGAACGGTGGTACAGTCCAATCGTTGTTCCTTGTCAGCGCCAACACCTTTGGTGTGTACAATCCGACAAACAACGGTCAGTCTTTAGCTTTTGCTATTCAAAACGGGCAGATGTTTGTCAACGAAGCTTTCATACCATATGCATCCATCACCCTTGCAAAACTGGGAAGCTGGTACTCTGCGAACTACGTATCCGGTCAAACTGGTACAATTATGCGTGCGGACGGTTCGTTCGAGCTTAACGGGGTTACAGCGGGTCAAGGGCGTTTGGTGATCAACAACAACCGCATAGTTGTATTCGATACATCAAATAATCCGGTGTGTGTAATGGGAGCGCGTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fa78cf2ea31d0f8e8395bef9ea97d48020de3baa32a9fe56c5ea2ee3dcf08c19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7737
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagS_Vid5 Truncaite,L., Simoliunas,E. and Meskys,R. 2011-08-10 — GenBank