Protein

View in Explore
Genbank accession
YP_010093365.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,72
Protein sequence
MATIEDLANQVGELTDATTDLLTEVNGQKGRLENLADGAQDSANDAQSHANASAGSAIDSSNYANDSAGSAQQSATSAAEAKTYRDQAEEISGLDTVEEAVDLALDARHFGVLSEAEAEAIRADNNEQFAASGFVHMGLAREDGGSMIRINEGAWSRINEDFPDQLALGYSQTDTGRVGNSKTEQARTIIAGCVSTIQTNAYGGYGYHTVKFPEAPNGTVTYDSATGVITDFTKDVDPKYGDVAADVNEAVARAFEGEVKNGDFRFGDNGDWNVGGNTPPTLTTDGAYFSAIDGTIVPEFSSIIGEAYEVEVNVVPDTPTAGNLGSLSYNSGVRIGYLVEGINKITYTHDALQTSTDLYLQSWVAGLTISNVSIRKVTNEVVTERVDMWGFEQWHEEVTDGEVFDCVQSLATTFGDTDVPTVLSKRPLSYFQVYDGQFEDPSAINDQYRCVDWNTITDVQKVKVAAYLKEKLFVGENGNLVNVRIRQRTIAGAGNGDWYSTNSTATGRMQVTPHIDSRLAPRGARDASNDYHIGFANDCFEGDTTSVGVWKLVVSTQTIDVAYKSECYFLVCGTVPRLNQGAYHPRFNEMGADGFTTGDGQRRAYWYEADLMNTPTAPRDCFVAGSGGYPRPADTFRYGHGFISSGGSGRPDGRFYDAIYAGGVGGCIDMRLSAHDASSTEKASEVRASVENGTYRGIEDLTKTYVLGLGDGAYFYCYGTGTPIRPNGDNSPQLSGGVANWLGATSTDTTYMLQGENRTTQDWLAQGFHCYLKGTGGNEAADATETTQTTEYFFRISGTTSGDLMHLTPMEGYPVRGGTNGTRLILNNCTLTFTVNSWQGDSYGMDTKKSDISVSGEFTQQTLYGDPSTLLQALPDGWYGDWGGLIS
Physico‐chemical
properties
protein length:887 AA
molecular weight: 95524,17760 Da
isoelectric point:4,43665
aromaticity:0,09808
hydropathy:-0,41928

Domains

Domains [InterPro]
DC_1387
STR
2–887
DC_1387
YP_010093365.1
1 887
Architecture
STR
STR 2-887
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010093365.1
1 887
Domain Start End Length (AA) Confidence
N-terminal 1 387 387 0,6708
Central domain 388 623 237 0,5170
C-terminal 624 887 263 0,4135
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-387
Central
388-623
C-terminal
624-887

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.238.A._10N.261.52.F10
[NCBI] 		1881231 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio breoganii
[NCBI] 		553239 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010093365.1 [NCBI]
Genbank nucleotide accession
NC_055735 [NCBI]
CDS location
range 8774 -> 11437
strand +
CDS
ATGGCAACAATAGAAGACTTGGCAAATCAGGTAGGGGAACTTACTGATGCCACAACAGACCTATTAACGGAAGTTAATGGACAAAAAGGAAGGCTAGAGAATTTAGCAGATGGTGCACAAGATAGTGCTAATGACGCTCAATCCCACGCCAATGCCTCGGCAGGAAGTGCAATCGATTCTAGCAACTACGCTAATGATTCAGCAGGTAGCGCACAACAGTCTGCAACCAGTGCCGCAGAAGCTAAAACGTACCGTGACCAAGCAGAAGAAATCTCTGGTTTGGACACTGTAGAAGAAGCAGTTGATTTAGCACTAGATGCTCGACACTTTGGCGTATTGAGTGAAGCAGAGGCTGAGGCTATCCGCGCAGACAATAATGAACAGTTTGCGGCTAGCGGTTTTGTGCATATGGGCTTAGCCAGAGAGGATGGTGGCTCAATGATTCGCATTAACGAGGGGGCATGGTCAAGAATAAATGAAGATTTTCCAGATCAGCTCGCTTTAGGCTATTCACAAACTGATACAGGTCGTGTAGGTAACTCTAAAACAGAGCAGGCAAGAACCATTATTGCAGGGTGTGTATCCACTATACAGACTAACGCTTATGGTGGATACGGGTATCATACAGTCAAATTCCCCGAAGCACCAAACGGCACAGTAACCTATGACTCTGCCACAGGTGTTATCACTGACTTTACCAAGGATGTTGATCCTAAGTATGGCGATGTAGCTGCTGATGTTAATGAAGCTGTTGCAAGGGCTTTTGAAGGCGAAGTTAAGAATGGTGATTTTAGGTTTGGTGATAATGGGGATTGGAATGTTGGCGGAAACACTCCACCAACCTTGACTACTGATGGTGCATACTTCTCCGCAATAGACGGAACTATAGTTCCTGAGTTTAGCTCCATAATTGGAGAGGCTTATGAGGTTGAGGTTAATGTTGTACCGGATACCCCTACTGCGGGGAATCTTGGTTCACTGTCCTACAATAGTGGAGTAAGAATTGGCTATCTGGTGGAAGGTATAAACAAGATTACCTACACTCACGACGCATTACAAACGAGCACCGACCTATACCTACAATCTTGGGTAGCTGGTTTAACCATCTCAAACGTATCCATCCGCAAAGTCACCAACGAAGTAGTAACAGAACGTGTAGACATGTGGGGATTTGAGCAATGGCATGAAGAAGTAACTGATGGTGAAGTATTTGATTGTGTCCAGTCATTAGCTACTACATTTGGTGATACCGATGTACCTACTGTTTTATCTAAACGTCCATTAAGTTACTTTCAAGTGTATGACGGTCAGTTTGAAGACCCTAGTGCCATCAATGACCAATACCGATGTGTTGATTGGAATACCATTACTGACGTACAGAAAGTGAAGGTAGCTGCTTACCTGAAAGAGAAACTGTTTGTAGGTGAGAATGGTAATCTGGTTAATGTGCGTATTCGTCAACGTACTATTGCAGGTGCAGGTAATGGGGATTGGTATTCTACAAATAGTACCGCAACTGGGAGAATGCAAGTAACTCCTCATATAGACTCTCGACTAGCCCCAAGAGGTGCAAGAGATGCTTCTAATGATTATCACATAGGATTTGCAAATGATTGTTTTGAAGGTGATACAACTTCTGTTGGTGTTTGGAAACTAGTGGTATCTACTCAAACAATCGATGTAGCATACAAAAGCGAATGCTACTTCCTAGTATGTGGTACTGTTCCAAGATTGAACCAAGGTGCTTATCATCCTAGGTTTAATGAAATGGGTGCCGATGGCTTTACAACTGGTGATGGACAGAGGCGTGCATACTGGTACGAGGCTGATCTGATGAATACACCTACGGCACCTCGGGACTGCTTTGTGGCAGGGTCTGGCGGATACCCAAGACCAGCAGATACGTTTCGATATGGACATGGGTTTATTTCAAGTGGTGGTTCAGGTAGACCAGACGGTCGTTTCTACGATGCCATTTACGCAGGTGGCGTAGGCGGTTGCATCGATATGCGCTTATCTGCTCATGATGCTTCTAGTACTGAGAAAGCTTCTGAGGTACGTGCTAGTGTTGAGAATGGTACTTATCGTGGTATAGAAGATCTGACTAAAACTTATGTATTAGGTTTGGGTGATGGTGCGTATTTCTATTGCTACGGGACCGGTACGCCTATCAGACCTAATGGTGATAACTCCCCTCAACTATCAGGAGGTGTGGCTAATTGGTTAGGTGCAACGTCTACTGACACTACTTACATGCTTCAGGGTGAAAACCGTACTACTCAAGACTGGTTAGCACAAGGGTTTCATTGTTACTTGAAAGGGACTGGCGGGAATGAAGCGGCAGATGCAACAGAAACTACTCAAACCACAGAGTATTTCTTCAGGATATCTGGGACAACTTCTGGCGATCTGATGCACCTTACTCCAATGGAGGGCTACCCTGTTAGGGGTGGTACTAATGGAACTCGATTAATCCTCAATAACTGCACACTTACATTTACTGTGAATAGTTGGCAAGGGGATTCTTACGGAATGGACACTAAGAAATCCGACATCTCAGTATCAGGTGAGTTCACTCAACAAACACTGTATGGAGATCCGTCAACTTTACTTCAAGCACTCCCTGATGGATGGTATGGAGACTGGGGTGGGTTAATTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
58eb1d52969c2a3583e18fa05df71e410ae3f8f080a906d1341148f7f60bd147
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3493
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank