Protein

View in Explore
Genbank accession
YP_717701.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,83
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDAIDNRGNSALRPFKTIQRAFLEVARFSYRVGLSNDEFDAFSIMLYPAEYIIDNRPGDVLYTNVAPIDENSNLDLTSPNNVLYKFNSVEGGVIVPRGCSLVGTDLRRTKIIPKYVPYPTILPSKNINTEEQSPSRTAIFKVTGGTYFWQFSFFDGAEEGVYFKPDSTETLAPKYSHHKLTCFEFADGRNTLSDLITGGTVPNADYSAVPNILERTDLEIYYQKVSKAFATIPDTSGDPTQDQIQARVEENRIVGPISDEYRVLQITRNGQTATAVTVDEFDNPRDHGFSVGVNINVSGVTGSTGPQSDIDATLYNGSFTVTSASGNVFTYQMQGEPTGNAVGSNISVKTEIDTVDSASPYAFNLSLRSVWGMNGMNADGSKATGFKSMVVAQFTGLSLQKDDRAFVRYNESTGNYDVATAGDGAHLDGFAEYRRGWGHRHIVCSNDAFIQSVSVFAVGYDTHFTAESGGDMSITNSNSNFGNTALRSAGFKAQAFSKDKAGEITHIVPPKALQVISTTATGTSGESSITLVNDGSIEGVIEGTVVSGDGIGSGATVGSVNRSTRVVTLTQPNTATVNGNVIFGEEVSINWVNIDIQRTKVINSALAGQGGTAGTRLYLYGYTTQASPPTTRVQGFTVGARQDGEGANAVADTINCLLVAAGANSASVQQASIAPYGPSVSGVAAGQVGSPIQYDENTYTISGSTQVGGWYLSVSATDNEIYTTLNTNNQYNNVNFTPTTFLKRIPDSRDLQDRTYRVRMVIDKDKTNPLPRNPISGYVMQPLNSDTTNYNLNRAFYIYDIEVVQEFERGVKDGIFYLTLLCASIAPSTSNFNNRKFSQNVNEVYPTFDRDNPIADPNAAVSVADNQTIGLVNSTDGATPTPNLDPKRSITKESIQFLLTDTGWTQPGTTPNYDSINERLSSINLTARAGDEETRKINIRENNDGTVAPIPIELRRHSILRSGNHTFEYLGFGPGNYSTAFPQTQVETLTQNQVRFSQSIKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITNEDIAQLNVIGEENTTIETFSELVLTDKLTVIGGASNQLESIFAGPVTFQGQTTFTSNLSAKKITYFNQDGTVIKQSLLAPEDANGLPDFSNITGYDTPADGDLVYNINWTPGKSLGWIYSGQTWYEFGLTDTGFINIDPNNGSPIIGIGTAANSNFRVNVDGNVRIDGNVSGTGRGLVGSDKYITKSYTGDGATLTFAVTTYVAPYQHTDDSLLVFLNGVAQIAGTNYTVDSLGANVVFTDAPQSTDTVHILELPI
Physico‐chemical
properties
protein length:1317 AA
molecular weight: 142179,28960 Da
isoelectric point:4,70447
aromaticity:0,09188
hydropathy:-0,28998

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_717701.1
1 1317
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,9687
Central domain 92 311 221 0,8922
C-terminal 312 1317 1005 0,0502
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-311
C-terminal
312-1317

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage syn9
[NCBI] 		382359 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus
[NCBI] 		1129 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 8012
[NCBI] 		166313 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_717701.1 [NCBI]
Genbank nucleotide accession
NC_008296 [NCBI]
CDS location
range 23951 -> 27904
strand +
CDS
ATGGCACTAACCCGTCTTAAGAATATTATTACTTCCCGTACGGGAAGAATTATCTACGTTAACCCTGACGATTTTGATGCCTCTGATGCAATTGACAACAGAGGCAACTCGGCATTGCGTCCGTTTAAGACTATTCAGAGAGCATTTCTTGAAGTTGCTAGATTTTCGTATCGAGTAGGTTTGTCAAACGACGAATTTGACGCCTTCTCGATTATGCTGTATCCAGCAGAATATATTATTGATAATAGACCAGGCGATGTGCTTTACACTAACGTTGCTCCCATTGATGAAAACTCTAACCTGGATCTGACATCACCCAATAACGTATTATATAAGTTTAACTCTGTAGAAGGTGGCGTTATCGTCCCCAGAGGTTGCTCTCTGGTTGGCACAGACCTTAGACGTACTAAGATCATTCCTAAGTATGTGCCCTATCCTACCATTCTACCTTCCAAGAATATCAACACAGAAGAGCAATCACCATCCCGCACTGCTATCTTTAAGGTAACGGGTGGTACTTACTTCTGGCAATTCTCCTTCTTTGATGGTGCCGAAGAAGGTGTGTATTTCAAACCTGATAGCACTGAAACGCTTGCACCTAAGTATTCGCACCATAAACTTACCTGCTTTGAGTTTGCTGATGGTCGTAATACTCTTAGTGATCTTATCACTGGTGGCACTGTCCCTAACGCTGATTATTCTGCTGTCCCCAACATTCTAGAGCGGACAGACCTGGAGATTTACTACCAGAAAGTATCGAAAGCATTTGCTACAATTCCTGATACATCTGGTGATCCCACACAAGACCAAATTCAGGCAAGGGTTGAAGAAAACAGAATCGTTGGTCCTATCTCTGATGAATACCGAGTCCTTCAGATCACAAGAAATGGTCAGACAGCAACGGCAGTTACTGTTGACGAGTTTGATAACCCCAGAGACCACGGATTTAGTGTTGGCGTTAACATTAACGTTTCAGGTGTTACTGGATCAACTGGACCGCAGTCCGATATTGATGCAACGCTTTATAACGGATCTTTCACAGTCACGTCCGCATCTGGTAACGTTTTTACTTACCAGATGCAAGGAGAACCCACAGGAAACGCTGTAGGATCTAACATCTCCGTAAAAACTGAAATTGATACTGTTGACTCTGCATCTCCATATGCTTTCAACCTGTCACTGAGAAGTGTCTGGGGTATGAATGGTATGAATGCAGACGGTAGCAAAGCAACTGGTTTCAAATCGATGGTTGTGGCGCAGTTTACTGGTCTGAGTCTTCAGAAAGATGACCGTGCATTTGTAAGATATAATGAATCAACTGGTAACTATGATGTAGCAACTGCTGGTGATGGTGCTCACCTGGATGGTTTTGCTGAATATCGTAGAGGTTGGGGACACAGACACATTGTTTGCTCTAATGATGCATTCATTCAGTCAGTTTCGGTCTTCGCTGTTGGATACGACACACACTTCACTGCTGAAAGTGGTGGTGACATGTCAATTACCAACTCTAACAGTAACTTCGGTAACACAGCTTTAAGATCCGCTGGATTCAAGGCACAGGCATTCTCGAAAGATAAAGCAGGTGAAATTACTCACATTGTCCCACCTAAGGCACTTCAGGTTATTTCTACTACTGCAACTGGCACATCTGGTGAATCTTCAATCACATTAGTTAATGATGGATCGATTGAAGGTGTCATTGAAGGCACAGTAGTAAGTGGTGATGGCATTGGTTCTGGTGCTACAGTTGGATCTGTCAACAGAAGCACCAGAGTCGTTACACTGACTCAACCAAACACAGCAACTGTCAATGGTAATGTAATCTTTGGTGAAGAAGTTTCGATCAACTGGGTAAACATTGACATTCAACGCACCAAAGTAATTAACTCTGCTCTTGCTGGACAGGGTGGCACAGCAGGAACAAGACTTTACCTCTATGGATATACGACTCAAGCTTCACCTCCTACTACAAGGGTCCAAGGTTTCACCGTTGGTGCTCGTCAAGACGGGGAGGGTGCTAATGCTGTCGCAGACACAATCAACTGCCTCTTAGTTGCTGCTGGTGCAAATTCTGCATCAGTCCAACAAGCATCTATTGCACCTTATGGTCCTAGTGTATCTGGTGTTGCTGCTGGACAAGTTGGATCTCCTATTCAATATGACGAAAACACATATACAATCAGTGGTAGCACTCAGGTTGGTGGTTGGTATCTGTCGGTATCTGCTACTGACAATGAAATTTACACAACATTAAACACAAACAACCAATACAATAACGTTAACTTCACTCCTACAACTTTCCTCAAGAGGATTCCTGATAGCAGAGACCTGCAAGACAGAACTTATCGTGTCCGTATGGTAATTGATAAGGATAAGACGAATCCCCTGCCCCGTAATCCTATCAGTGGTTATGTAATGCAACCTCTGAATAGTGATACGACAAATTACAACCTTAATCGTGCATTCTATATCTACGACATTGAGGTTGTCCAAGAATTTGAAAGAGGTGTTAAAGATGGAATCTTCTACCTTACCTTGCTTTGTGCATCTATTGCACCTTCGACTTCTAATTTCAACAACAGAAAATTCTCTCAAAATGTCAACGAAGTCTATCCTACGTTTGACAGAGACAACCCTATTGCTGACCCTAATGCTGCGGTTTCCGTCGCTGACAATCAAACTATCGGACTCGTCAATTCGACAGACGGAGCAACACCCACACCAAATTTAGATCCTAAGAGATCTATCACTAAAGAATCAATTCAATTCTTGTTGACAGATACTGGTTGGACACAACCAGGCACGACACCTAACTATGATTCTATCAACGAAAGATTGTCTTCTATCAATTTAACTGCTCGTGCTGGTGATGAAGAAACTAGAAAGATCAATATCCGCGAAAACAATGATGGGACTGTCGCACCTATCCCAATTGAATTACGGAGGCACTCGATCCTTAGATCTGGTAACCACACGTTTGAATACCTTGGTTTTGGTCCTGGTAACTATTCAACAGCATTCCCTCAGACACAAGTAGAAACACTGACACAGAATCAGGTTAGATTCTCACAGTCTATCAAGGAAGAAGCAGGTGTTGCTTTCTATTCTGGTCTTAACTCTAACGGTGACCTGTTTATTGGTAACCAAGTTATCAACCCTGTTACTGGTCAGATTACTAACGAAGATATTGCACAACTGAATGTCATTGGTGAAGAAAACACTACTATTGAAACATTCTCTGAGTTGGTCCTTACCGACAAATTGACTGTTATTGGTGGTGCATCCAACCAGTTGGAATCTATCTTTGCTGGTCCTGTTACTTTCCAAGGACAAACTACCTTCACTTCCAATCTTTCTGCTAAGAAGATCACATACTTCAACCAGGATGGCACGGTCATCAAACAATCCTTACTGGCACCTGAAGATGCAAATGGACTCCCAGATTTTAGTAATATCACAGGATACGATACGCCTGCTGATGGTGATCTTGTTTACAACATCAATTGGACACCTGGCAAGTCGCTTGGTTGGATTTACTCAGGTCAAACATGGTACGAGTTTGGTCTCACGGATACTGGTTTCATCAATATTGATCCTAACAACGGTAGCCCAATTATCGGTATTGGTACTGCTGCTAACTCTAATTTTAGAGTAAATGTTGATGGTAACGTTAGAATTGATGGTAACGTCTCTGGCACAGGTAGAGGACTAGTTGGATCCGACAAATATATTACTAAATCATATACTGGTGATGGTGCCACGTTGACATTTGCAGTCACAACTTATGTTGCTCCTTATCAACATACCGACGATTCGTTGTTGGTATTCTTGAATGGTGTAGCACAGATTGCAGGCACTAATTATACCGTTGACTCTTTAGGCGCAAACGTGGTATTTACTGATGCACCACAATCGACTGATACGGTGCATATTCTTGAGTTGCCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
93d35d09d5f04472cb6a0a0db3594a822e648ba0b60a81e86960e95f3a46e3ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3775
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage Syn9 Hendrix,R.W., Pedulla,M.L., Peebles,C.L., Pope,W., Houtz,J.M., Smith,A.L., Hatfull,G.F. and King,J.A. 2003-10 — GenBank