Protein

View in Explore
Genbank accession
QYC95369.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MALERQEVKNPTGIVTDIAPADLPLDKWSFGNNVRFKNGKTQKALGHSPIFDTAQAPILDMFPFIRNNIPYWLLCSEKRLYLADGTTIIDVSPGPYSASVTNRWSVGSFNGVIFSNDGVNPPHHLPPTESVFRVLPNFPANTTFRRLKSFKNFLVGLNVTSNSIEMPQMVWWSTSADAGGVPASWDPTDPTKDAGQNTLADTNGAIVDGVKLRDSFIIYKEDSVYSMRYIGGLYIFQFQQLFNDVGILGPNCAIEFDGNHFVVGHGDVYVHNGVQKQSVIDAQVRKFFFSDINPDNYQRTFVLADHVNTEMWVCYSSTRSEPGKHCDRAIIWNWKENTWSIRDLPNVLSGAYGIIDPKTSNLWDDDSNPWDTDTSVWGEGSYNPAKSSMIFTSFQDAKLFLFGETSTFSGQSFTSTLERSDIYLGDDRMMKTVSAVIPHITGNGVCNVWVGNAQVQGSGIRWKGPYPYRIGQDYKIDTKHVGRYIALKFDFASAGDWYFNGYTLEMAPKAGMR
Physico‐chemical
properties
protein length:513 AA
molecular weight: 57446,86450 Da
isoelectric point:5,71268
aromaticity:0,12865
hydropathy:-0,31423

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYC95369.1
1 513
Domain Start End Length (AA) Confidence
N-terminal 1 404 404 0,7003
Central domain 405 502 99 0,1034
C-terminal 503 513 10 0,9953
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-404
Central
405-502
C-terminal
503-513

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PhL_UNISO_PA-DSM_ph0041x
[NCBI] 		2812901 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYC95369.1 [NCBI]
Genbank nucleotide accession
MW526260.1 [NCBI]
CDS location
range 12398 -> 13939
strand +
CDS
ATGGCCCTAGAGAGACAAGAGGTCAAGAACCCAACGGGTATCGTGACTGATATTGCACCCGCTGACCTGCCCCTGGATAAATGGTCCTTCGGGAACAACGTCCGGTTTAAGAACGGTAAGACTCAGAAGGCTCTGGGCCATTCCCCCATCTTTGATACTGCCCAGGCCCCTATCTTGGATATGTTCCCCTTCATTAGGAACAACATTCCATACTGGCTCCTGTGCTCAGAAAAGAGGCTTTACTTGGCAGATGGGACTACCATCATTGATGTGTCCCCAGGTCCATACTCTGCGAGTGTAACCAACCGGTGGTCTGTAGGTTCCTTCAACGGAGTTATCTTTTCTAACGATGGGGTTAACCCTCCCCACCACCTACCACCAACTGAGAGTGTGTTTAGGGTTCTACCTAACTTCCCAGCGAATACAACCTTTAGACGTCTTAAGTCCTTCAAGAACTTCTTGGTTGGCTTGAATGTAACGTCTAACTCTATTGAAATGCCCCAGATGGTCTGGTGGAGTACCTCGGCTGATGCTGGTGGTGTACCGGCCTCTTGGGACCCAACAGACCCTACTAAAGATGCTGGACAGAACACCTTGGCTGATACCAATGGTGCTATCGTGGATGGTGTGAAGCTTCGTGACTCCTTCATCATCTACAAGGAAGACTCTGTATACTCCATGCGATATATCGGTGGTCTGTACATCTTCCAATTCCAACAACTGTTTAATGATGTAGGTATCCTTGGTCCTAACTGCGCTATAGAGTTTGATGGTAACCACTTTGTTGTAGGTCATGGTGACGTCTATGTCCACAACGGTGTACAGAAGCAGTCCGTGATTGATGCTCAGGTCCGTAAGTTCTTCTTCTCGGATATCAACCCGGATAACTACCAACGGACCTTTGTGCTAGCTGACCATGTGAACACTGAAATGTGGGTATGCTACTCCTCGACTCGATCTGAGCCTGGGAAGCATTGCGATAGGGCTATCATCTGGAACTGGAAGGAGAATACTTGGAGTATCCGAGACCTCCCCAATGTTCTCAGCGGAGCCTATGGCATCATTGACCCTAAGACTTCTAACCTCTGGGATGACGACTCCAACCCCTGGGATACCGATACGTCGGTCTGGGGTGAAGGCTCGTATAATCCAGCGAAGTCTAGTATGATCTTCACGTCCTTCCAGGATGCTAAGCTCTTCCTCTTCGGGGAGACTTCTACATTCTCTGGACAATCATTCACGAGTACCCTTGAGAGATCCGACATCTATCTTGGGGATGACCGAATGATGAAGACCGTCAGTGCTGTTATACCTCACATTACAGGCAACGGGGTATGCAACGTTTGGGTGGGTAATGCCCAGGTACAAGGTTCAGGTATCCGATGGAAAGGGCCTTACCCGTACCGCATTGGGCAGGACTATAAGATTGACACCAAGCATGTGGGCCGATACATTGCCTTGAAGTTTGACTTCGCCTCAGCAGGTGACTGGTACTTCAATGGATATACTTTGGAAATGGCCCCGAAGGCAGGTATGCGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3153edd364f6daea77240373e3dd928ef16d48dfce71ac26fc955259794ae9e3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8958
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of lytic bacteriophages for Pseudomonas aeruginosa Rossi,F.N., Setubal,J.C., da Silva,A.M. and Balcao,V.M. 2022-01 — GenBank