Protein

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Genbank accession

CAB4138816.1 [GenBank]

Protein name

Collagen triple helix repeat

RBP type

Evidence RBPdetect

Probability 0,90

Evidence RBPdetect2

Probability 0,92

Protein sequence

MPTSPPDPYERQYDFSNHSILQPNTPQPGNKIDLELNEIRESLNATISRLGEIQRDDGKVRQTAVELTVGPQGLPGAKGDKGDKGDTGQAGAQGAQGVPGIQGQQGIQGQQGATGATGATGATGAAGQVGPQGAKGDKGDKGDTGAAGPAGPQGQTGPAGPTGPTGSQGPQGATGAAGATGPVGPVGPQGPQGDKYAGTSTTSLAVSNGTKTLTTQTGLAWTGQQDLTIVYDASNHMHAVVTTYNASTGVLVADVSNHTGSGTYASWTINLEGAIGAQGPVGPQGSTGATGATGATGPAGPAGAQGPQGATGPQGATGATGATGAQGPAGATGATGPAGATGATGATGAAGPAGPVGPEGPQGPQGIQGPEGQQGLQGPVGDPGPQGDAGAPGINGSMLFNWLGAYDNGVTYAANDGVQFNGSAYVMTATIGGAGYDPVGYPGNWSLVVSKGDEGDQGSTGPAGANGAPCVMRGTWADFTSYSAGDLVEYGGLIYSALNTHYAYGDPPPSANWVAVSITTIPGPQGEPGAPGANGADGAQGPQGPAGSPAKTVNDVSATVPYTLQLSDNNNIVFTTATGEYGPGIIVPNDTYITLEDMTVVPSPSNFPIGAVVTIVSSDTNNSISGDSAAPYINGSLSTQAVGQKVITLVKVNSSNWYFA

Physico‐chemical properties

protein length:	660 AA
molecular weight:	64099,72180 Da
isoelectric point:	4,25141
aromaticity:	0,05303
hydropathy:	-0,34924

Domains

Domains [InterPro]

DC_0862
STR
1–70

DC_0862 IPR008160 DC_1245 DC_0876 IPR003610 G3DSA:1.20.5.320

IPR050149
Unmapped
69–549

IPR050149

DC_1266
STR
99–158

DC_1266 IPR008160 G3DSA:1.20.5.320 DC_0876

IPR008160
STR
142–194

IPR008160 IPR003610 G3DSA:2.10.10.20

IPR036573
STR
476–511

IPR036573

CAB4138816.1

1 660

Architecture

STR

ATT

STR

STR 1-473 | ATT 474-519 | STR 520-654 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0862	STR	DC_0862	1	70	Novel HMM	DC_0862	Central	Low	Positional only	34 proteins / 34 hits
IPR050149	Unmapped	-	69	549	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	70	124	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1266	STR	DC_1266	99	158	Novel HMM	DC_1266	Central	Low	Positional only	66 proteins / 66 hits
DC_1245	STR	DC_1245	141	319	Novel HMM	DC_1245	Central	Low	Positional only	25 proteins / 25 hits
IPR008160	STR	DC_0536	142	194	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR008160	STR	DC_0536	273	328	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0876	STR	DC_0876	325	472	Novel HMM	DC_0876	Central	Low	Positional only	94 proteins / 94 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	366	421	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
IPR003610	CBM	DC_0028	403	448	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
DC_0876	STR	DC_0876	469	654	Novel HMM	DC_0876	Central	Low	Positional only	94 proteins / 94 hits
IPR003610	CBM	DC_0028	473	516	InterPro cluster	Carbohydrate binding module family 5/12	C-terminal	High	Text match	29 proteins / 44 hits
G3DSA:2.10.10.20	ATT	G3DSA:2.10.10.20	474	519	Merged direct domain	G3DSA:2.10.10.20	N-terminal	Low	Positional only	19 proteins / 19 hits
IPR036573	STR	IPR036573	476	511	Merged direct domain	Carbohydrate-binding module superfamily 5/12	Central	Low	Positional only	2 proteins / 2 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	522	574	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	uncultured Caudovirales phage [NCBI]	2100421	Uroviricota > Caudoviricetes > Peduoviridae > Maltschvirus maltsch >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

CAB4138816.1 [NCBI]

Genbank nucleotide accession

LR796363 [NCBI]

CDS location

range 22062 -> 24044
strand +

CDS

ATGCCAACATCGCCGCCCGATCCCTACGAGCGTCAGTACGACTTCTCAAATCACTCGATTTTGCAGCCCAACACGCCGCAACCCGGCAACAAAATCGACCTGGAGCTCAACGAAATCCGCGAGTCCCTCAACGCGACCATCAGCCGGCTCGGCGAGATCCAACGCGATGACGGAAAAGTGCGTCAAACCGCGGTCGAATTGACTGTCGGGCCGCAAGGCTTGCCCGGCGCGAAGGGCGACAAGGGTGACAAAGGCGACACCGGCCAAGCCGGCGCGCAAGGCGCGCAGGGCGTGCCCGGAATTCAGGGCCAGCAAGGCATCCAAGGCCAGCAAGGGGCCACGGGAGCGACCGGTGCGACCGGTGCGACTGGCGCTGCGGGCCAAGTCGGTCCCCAGGGCGCAAAAGGCGACAAAGGCGACAAGGGAGACACCGGTGCAGCGGGCCCTGCGGGCCCTCAGGGCCAGACCGGCCCAGCGGGACCCACGGGACCGACCGGATCGCAAGGGCCCCAAGGGGCCACAGGGGCTGCCGGAGCGACCGGACCTGTCGGACCAGTCGGACCTCAAGGCCCCCAGGGCGACAAGTACGCCGGCACCTCGACAACGAGCCTGGCTGTGTCGAACGGCACCAAGACTTTGACGACTCAGACGGGCCTGGCGTGGACCGGCCAGCAGGATCTGACGATCGTCTACGATGCGAGCAACCACATGCACGCGGTTGTGACGACCTACAACGCCAGCACGGGCGTCTTGGTCGCGGATGTGAGCAACCACACCGGCAGCGGCACATACGCGAGCTGGACGATCAACCTGGAAGGCGCGATCGGCGCGCAAGGCCCGGTCGGGCCCCAGGGAAGCACGGGAGCTACGGGAGCCACGGGGGCTACGGGCCCGGCGGGGCCCGCGGGAGCGCAAGGACCCCAGGGGGCCACGGGGCCGCAAGGCGCAACCGGGGCTACGGGAGCTACGGGGGCCCAGGGACCCGCGGGGGCCACGGGTGCAACGGGGCCCGCAGGGGCCACAGGGGCCACAGGGGCCACGGGAGCTGCGGGCCCGGCGGGACCAGTCGGACCGGAAGGGCCGCAAGGGCCCCAAGGGATCCAAGGGCCCGAGGGCCAGCAGGGCCTTCAGGGCCCTGTGGGTGATCCGGGTCCCCAGGGTGACGCCGGTGCGCCTGGCATCAACGGATCGATGTTGTTTAACTGGCTTGGTGCGTACGACAACGGCGTGACCTACGCGGCGAACGATGGCGTGCAGTTCAACGGCAGCGCGTATGTAATGACGGCCACGATCGGCGGTGCCGGCTACGATCCGGTGGGTTATCCTGGCAACTGGTCGTTGGTCGTGAGCAAGGGTGATGAGGGTGATCAGGGATCTACCGGCCCTGCGGGCGCGAACGGCGCGCCGTGCGTGATGCGCGGCACCTGGGCTGATTTCACGAGCTACTCCGCCGGCGACTTGGTGGAATACGGCGGTCTGATCTACTCGGCGCTGAACACGCATTACGCTTACGGCGACCCGCCCCCCAGCGCGAATTGGGTGGCGGTGAGCATCACCACGATCCCTGGGCCGCAAGGTGAGCCCGGAGCTCCTGGCGCAAACGGCGCTGACGGCGCGCAAGGTCCGCAGGGTCCGGCGGGGTCGCCGGCAAAGACTGTCAACGATGTGTCGGCGACTGTGCCGTACACGCTGCAGCTTTCGGACAACAACAACATCGTCTTCACGACAGCGACCGGTGAATACGGCCCTGGCATCATTGTTCCAAATGACACTTACATCACATTGGAAGACATGACTGTCGTGCCTAGCCCGTCAAACTTCCCGATCGGAGCTGTCGTGACGATCGTTTCCAGCGACACAAACAACAGCATTTCAGGTGACTCCGCAGCTCCTTACATCAACGGAAGCCTTTCAACCCAGGCTGTTGGCCAGAAGGTGATCACTCTGGTGAAGGTCAATTCCAGTAATTGGTATTTCGCCTGA

Genome Context

Tertiary structure

PDB ID

b30033d5870631b7ede0148589ec76decb65e4b325cdd871111d8b154bb4af49

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,6710

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence