Protein

View in Explore
Genbank accession
YP_009008312.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 0,87
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MADRFPLIVNAVSKKIEEIVAGDNLELTNNGIVISGDSGAGKYLYSDGTTVLWSSPGDVYLTQSQTITNKTFDSCTISGTSNTLTNIPNTSLINSGITVNGVTVSLGGSITTPDNDTTYTIGAADAISPQEKIIRITGSDTSTDEVKITAGTNMNIARTGDTLILSSSYVDTDTVTRLQAYTGGAFQDGDVTIRGAGGTTVTQDTQSKTILVTSTDADTITRLRATAGQVYNSGDFTLLASGATSIAQGIDGNGDPTITYSSTDTITRLKGGGAGSFTSGDITVTGGTNVTVSQSGSTITVASQDNDTVTQFAANSTSLAAGDFRLTASGATTLTETSSGGVTTIEISSVNSDTGASLTASGGILLASDDFSLKNSTNFTGNTLVKWDSGNSQLANSLISDNGSEVTIGGDLIVTGTQTILETSTLIVEDNIIELRKGSSLVGADGGIQVNRTTDSNGTVVSYQQMQWYEAGSYWRSWDGSVEKRLVTETDTQVLSNKTLVSPTLTGPTLGAATATSINGLGVVSTASASININSAKSLEVQRSCLFTTDNNSGTVTVNFRNGGNVAYRSDTLASFSSTTSTQLRGLISDSTGLDRLVFQTSPNILTSLNTTSSTFNLLNSGAAAINFAGATTVLSIGSTTGTTTVNNDTVLSKDLTVGTTVGDIITLNGTVNSENADIVIRGSGSDPMSIGRGSGNVTTNTRVGVRALNAVTSGSQNTAFGYEAGYTINAGAANLAIGNRALRSCGIGNNNIALGRDVLLGCTDGSKNIAIGNNTLESATSGEANVCIGHYAGYAALGSGNVLIGPATNENTSDATYRPPNPGGDRQLVIGSGTEAWIEGNSDFKVTIPNEFAVTGDCTITGDLTVNGTTTSVNSNVMTVDDKEIELASVVNVVVQATAVNGNSTITGITPTTGLIPGMAVNSQTGGIDFGTDCIIVSITGNSAVLSNSVTGSGSVTFEAIGPSDTAANGGGLRLKGTTDKTITYDDSRADKYWTFSENLEVAFGKKFVIGNQLALSTTSIGSTVVNSSLTSVGTLVNLTVDGFLTIGGVVTEKVFNNYATTLTPASNVLTINVAGANNICGSPATQAINEWAFTGVSLSNGQSKTITLILDANTAATYGDDCTVDGNSVTNGVQWSGGSPPIATSNTDILTFIIMKDNAGITKVFGQGNTDFS
Physico‐chemical
properties
protein length:1175 AA
molecular weight: 119960,36130 Da
isoelectric point:4,28631
aromaticity:0,05021
hydropathy:-0,02562

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009008312.1
1 1175
Domain Start End Length (AA) Confidence
N-terminal 1 657 657 0,4762
Central domain 658 877 221 0,8442
C-terminal 878 1175 297 0,7217
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-657
Central
658-877
C-terminal
878-1175

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage ACG-2014h
[NCBI] 		1340810 Uroviricota > Caudoviricetes > Pantevenvirales > Sedonavirus > Sedonavirus tusconh
Host Synechococcus sp.
[NCBI] 		1131 cellular organisms > Bacteria > Bacillati > Cyanobacteriota/Melainabacteria group > Cyanobacteriota > Cyanophyceae
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009008312.1 [NCBI]
Genbank nucleotide accession
NC_023587 [NCBI]
CDS location
range 161718 -> 165245
strand +
CDS
ATGGCTGACCGTTTCCCATTAATTGTTAACGCAGTTTCCAAAAAAATTGAGGAAATTGTAGCAGGTGACAATTTAGAGTTAACCAATAATGGCATTGTCATTAGTGGCGACTCTGGTGCAGGAAAATACTTATACAGTGATGGAACCACTGTTTTGTGGAGTTCTCCTGGTGATGTATACCTAACGCAAAGTCAAACTATTACGAACAAGACGTTTGATTCTTGTACAATTTCTGGTACTTCAAATACTCTAACAAATATTCCGAATACATCACTAATCAATAGTGGTATCACGGTTAATGGTGTTACAGTTTCACTTGGTGGAAGTATTACAACCCCAGATAATGATACAACGTATACTATTGGTGCTGCGGATGCAATTAGTCCACAGGAAAAAATAATTCGTATTACAGGATCTGATACATCTACGGATGAGGTAAAGATTACTGCTGGAACAAACATGAATATCGCTAGAACAGGCGATACATTGATTTTAAGTTCTAGTTATGTTGATACTGATACTGTAACTAGACTTCAGGCATATACTGGTGGTGCATTCCAAGATGGTGACGTTACTATCCGAGGCGCTGGTGGCACCACTGTTACTCAGGATACACAATCAAAAACTATTCTAGTCACATCTACTGATGCTGACACAATCACCAGACTCAGAGCAACTGCTGGTCAGGTTTATAACTCTGGTGACTTCACATTACTTGCTAGCGGAGCAACTAGCATTGCACAGGGTATAGATGGCAATGGTGATCCTACTATTACCTATAGTTCTACCGATACTATTACTAGACTTAAAGGTGGTGGTGCAGGATCGTTCACATCTGGTGACATTACTGTTACTGGTGGTACAAATGTAACAGTATCTCAATCTGGTTCAACAATCACTGTTGCATCTCAGGATAACGATACAGTTACACAATTTGCTGCAAACTCTACGTCTCTAGCTGCTGGAGACTTTAGACTAACTGCTTCTGGTGCTACTACTCTTACGGAAACTTCTAGTGGTGGAGTAACCACAATTGAAATCAGTTCAGTTAACTCTGATACTGGTGCTTCTCTAACAGCATCTGGTGGTATTCTTCTTGCATCGGATGACTTCTCACTTAAGAACAGCACAAACTTTACTGGAAATACACTTGTAAAATGGGACAGTGGTAACTCTCAACTAGCAAACAGTCTTATTAGTGACAACGGATCTGAAGTAACTATCGGGGGTGACTTGATTGTCACTGGAACCCAAACGATCCTTGAAACATCTACTCTAATTGTAGAGGATAACATTATCGAACTTAGGAAGGGAAGTTCCTTGGTTGGTGCTGATGGTGGTATCCAAGTAAACAGAACTACTGACTCAAATGGAACAGTTGTTTCATATCAGCAAATGCAGTGGTATGAAGCTGGTTCATATTGGAGATCTTGGGATGGATCTGTTGAAAAGAGATTAGTAACAGAGACTGACACTCAAGTTCTTTCAAACAAAACTCTCGTATCTCCTACATTAACTGGTCCAACTCTTGGCGCTGCTACTGCAACTAGTATCAATGGATTGGGTGTTGTTAGCACAGCATCAGCATCTATCAATATTAACTCTGCAAAGAGTTTAGAGGTACAAAGATCTTGTTTGTTCACCACTGATAATAATAGTGGTACGGTTACAGTTAACTTTAGAAACGGTGGTAATGTAGCATATAGATCTGATACTCTTGCTTCATTCTCTTCTACAACATCAACACAACTTCGTGGTCTCATTAGTGATAGCACTGGACTTGATCGTCTCGTATTCCAGACTAGTCCAAACATTCTAACTTCACTTAATACTACATCTTCAACATTTAATTTACTAAATTCTGGTGCAGCAGCTATCAACTTCGCTGGAGCAACAACTGTTCTAAGCATTGGTTCAACTACAGGAACAACCACAGTCAATAATGATACTGTCTTATCAAAAGACCTTACAGTTGGTACAACAGTTGGTGATATTATTACACTGAATGGTACAGTCAACTCTGAGAATGCTGACATTGTAATTCGTGGCAGTGGTTCTGATCCAATGAGCATTGGCCGTGGATCTGGTAATGTAACTACAAACACACGAGTCGGAGTAAGAGCTTTAAACGCAGTCACAAGCGGATCTCAGAACACAGCATTTGGTTATGAAGCTGGTTACACAATTAATGCTGGTGCTGCTAACCTTGCTATAGGTAATAGAGCACTTAGAAGTTGTGGTATTGGCAACAATAATATTGCGTTGGGTCGTGATGTATTGCTAGGTTGTACAGACGGATCTAAGAACATTGCCATCGGTAACAATACTTTAGAGTCAGCAACTTCAGGTGAGGCTAACGTTTGTATTGGACATTATGCAGGTTATGCAGCACTTGGTAGTGGTAACGTTCTGATCGGTCCTGCTACTAATGAGAACACTTCTGATGCTACCTATCGTCCACCAAATCCAGGTGGTGATAGACAACTTGTCATCGGTTCTGGAACTGAGGCATGGATTGAAGGTAACAGTGACTTCAAGGTAACAATTCCAAACGAATTTGCCGTTACTGGAGACTGTACAATCACAGGTGACTTGACAGTTAATGGAACCACCACTAGCGTGAACTCTAATGTCATGACAGTGGATGATAAAGAGATTGAACTTGCTTCTGTTGTCAACGTTGTTGTTCAAGCAACAGCAGTAAATGGTAACTCCACAATTACAGGTATTACACCAACTACTGGATTGATTCCTGGAATGGCTGTAAATTCACAGACTGGTGGTATTGATTTTGGTACAGATTGTATTATTGTTTCTATCACTGGAAACAGTGCAGTCCTATCTAACTCTGTTACTGGATCTGGTAGTGTTACCTTTGAAGCAATAGGTCCTAGTGACACCGCAGCTAATGGCGGTGGATTGCGATTGAAAGGAACAACAGATAAGACTATCACATATGATGACAGCAGAGCAGATAAGTATTGGACATTCTCTGAAAACTTAGAGGTTGCATTTGGTAAAAAGTTTGTTATTGGTAACCAATTAGCATTGAGTACAACATCTATTGGATCTACTGTTGTCAACTCTTCACTCACTTCTGTTGGAACTTTAGTCAATCTAACTGTTGATGGATTCCTTACGATTGGTGGTGTGGTTACTGAAAAAGTATTCAATAACTATGCTACAACTTTGACACCAGCATCAAACGTTCTTACTATCAATGTTGCTGGTGCAAATAATATTTGTGGATCACCTGCAACACAAGCGATCAATGAGTGGGCATTTACTGGAGTAAGTTTGAGCAACGGTCAGTCTAAGACAATCACCTTGATCTTGGATGCAAACACTGCTGCTACTTACGGTGATGATTGTACAGTTGATGGTAACTCTGTAACTAATGGTGTACAGTGGTCTGGTGGTTCGCCACCAATTGCTACTTCTAACACAGACATTCTGACATTTATTATTATGAAAGACAACGCTGGTATTACCAAAGTGTTTGGTCAAGGCAACACAGACTTTAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a381fcfb42cecce8d38ef01107aa1daeb336d3702da7313b0c3db99dd1db64da
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5535
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50