Protein

View in Explore
Genbank accession
WYW04189.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MADFLATNEFAGTGAVMQVEVNFAGVRVDLPNQPAPYLEADDVKAAIVTPATNTTVEVVTPITMTQINALTFRTDVLVPVGQTLRVYRSTDIEFPIVDFVSLQVVTESDLDSQARQTLYAVMESSDNAAIAVRNSQTASETATQAFVLAEQAVETADAATVTADSAQAAAAAAVGTANAANSKADTALTNAAAAEAHAESVEVLAQQAGDDADAAAQSAADANTAANTAITTANGIDAKAQSALDASAAATTTANQAAATANGIAATANQANATANSANATAGQALTAANNAQAAVDGALTGKQDHAARLDQLVQLPATSGIYSVVTLNGGGVLARLTTSPFVGDTLMPSADANTFRVGLGLGAAQNVNFASVTTTGNVTANGYVAANTMGTVAGAQVAFTGGINAAGDIYGGTLRSKAGVVQSFAATAASNAHLWFYNVDGTSRGIIYAGTDSAIRIQAGASQIAATFTAAGQANFQSITTYRDSPTGQSYMYSPYAQLDGSMYGTCCLQLQGTGNGVANLGFHNAGRVAGSLWLNTDGQLWWMTNGGTNMLMLNNFNLMSQIAGNMTSDVIGSITMMQNVSGTNLGLNSVLGGGSLRFSSHNNVSGQSGSGSWRSLGNANAGGVSLWVRYA
Physico‐chemical
properties
protein length:633 AA
molecular weight: 64012,83240 Da
isoelectric point:4,37600
aromaticity:0,06003
hydropathy:0,08547

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04189.1
1 633
Domain Start End Length (AA) Confidence
N-terminal 1 249 249 0,9492
Central domain 250 448 200 0,2322
C-terminal 449 633 184 0,9775
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-249
Central
250-448
C-terminal
449-633

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-IPa-2
[NCBI] 		3132677 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04189.1 [NCBI]
Genbank nucleotide accession
PP496473.1 [NCBI]
CDS location
range 34080 -> 35981
strand +
CDS
ATGGCCGATTTCCTCGCCACGAACGAGTTCGCAGGTACTGGCGCGGTCATGCAGGTGGAGGTGAACTTCGCCGGTGTCCGAGTTGACTTGCCGAACCAGCCCGCTCCGTATCTGGAAGCGGATGATGTAAAGGCAGCCATCGTGACTCCGGCGACCAACACCACTGTCGAAGTGGTTACGCCGATCACCATGACTCAAATCAATGCCCTGACCTTCCGTACCGATGTACTGGTGCCGGTGGGCCAGACCCTGCGCGTGTACCGCAGCACTGACATCGAGTTCCCAATCGTGGACTTCGTGTCGTTGCAGGTGGTGACTGAATCCGACTTGGACAGTCAAGCACGCCAGACGCTTTACGCGGTGATGGAGTCCTCGGACAACGCCGCAATCGCTGTACGGAACTCGCAGACCGCAAGCGAGACCGCTACCCAAGCATTCGTGCTGGCCGAGCAAGCTGTGGAGACCGCTGATGCGGCCACCGTCACGGCTGATAGCGCTCAGGCTGCTGCGGCTGCTGCTGTCGGCACTGCAAACGCTGCGAATTCCAAGGCCGACACGGCTCTAACGAACGCTGCCGCTGCTGAGGCGCACGCGGAGTCTGTAGAAGTGCTGGCCCAACAGGCTGGTGACGACGCTGACGCTGCTGCACAGTCCGCTGCTGACGCTAACACCGCTGCCAACACAGCAATCACGACCGCCAACGGCATCGACGCCAAGGCTCAATCCGCTCTGGACGCATCCGCTGCCGCCACTACCACGGCGAACCAAGCGGCTGCTACTGCGAACGGCATTGCTGCTACTGCGAACCAAGCCAACGCCACTGCGAACTCTGCAAACGCCACGGCAGGTCAAGCTCTCACCGCTGCCAACAACGCTCAGGCTGCTGTTGACGGTGCGCTGACGGGCAAGCAGGACCACGCGGCGCGGCTGGATCAGCTCGTGCAGTTGCCAGCTACCTCCGGTATATACAGTGTGGTCACGCTTAACGGTGGTGGTGTGCTGGCCAGACTCACCACATCACCCTTTGTAGGTGACACGCTGATGCCATCTGCGGACGCTAACACGTTCCGTGTTGGTCTAGGTCTGGGCGCTGCTCAGAACGTGAACTTCGCCAGCGTGACTACAACAGGCAACGTGACTGCCAACGGGTACGTCGCAGCTAACACCATGGGCACTGTGGCTGGTGCGCAGGTTGCGTTCACTGGAGGCATCAACGCTGCTGGTGACATCTACGGCGGAACTCTCCGTTCAAAGGCGGGTGTTGTTCAGTCGTTCGCAGCTACTGCCGCGTCTAACGCGCACCTGTGGTTCTACAACGTCGATGGCACCTCGCGTGGTATTATCTACGCGGGCACTGACAGTGCGATCCGTATCCAAGCGGGCGCCTCACAGATTGCCGCTACGTTCACTGCCGCTGGTCAGGCGAATTTCCAGTCTATTACGACCTACCGAGATTCGCCAACCGGGCAGTCCTACATGTACAGCCCGTACGCTCAACTAGACGGCAGCATGTACGGCACATGCTGCCTGCAATTGCAGGGCACGGGTAATGGCGTAGCCAACCTCGGGTTCCACAACGCGGGCCGTGTGGCCGGTTCCCTGTGGCTGAACACTGACGGGCAACTGTGGTGGATGACCAACGGCGGCACCAACATGCTCATGCTGAACAACTTCAACCTCATGAGCCAGATCGCTGGGAACATGACGTCTGACGTGATTGGCAGCATCACCATGATGCAGAACGTGTCCGGTACGAACCTCGGACTGAACAGCGTCCTCGGTGGCGGATCGTTGCGCTTCTCGTCCCACAACAACGTTAGCGGCCAGTCCGGTTCCGGCTCGTGGCGCTCGCTCGGTAACGCAAACGCTGGCGGCGTTTCCCTTTGGGTCCGCTACGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e4643b6bc2023ed11df2dad1f51ae0cd0007825c032e6847a82603c3a14a90b5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6213
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank