Protein

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Genbank accession
QIG68319.1 [GenBank]
Protein name
tail fiber protein host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,96
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MSLHVKQAGAWSTVQNLYVNQSGVWVPVQYAYVKNAGAWVQYYSSEVVVTLAANTNNVNISTLFTSAVWTSSTNKRVVINSGVTIGSTSSGTPAMRTGVSWGGLLTIENAGTIQGAGGAGNSGAGGHALIADASGVIVKNTGIIRSGGGGGGHGGNGGNGYYTYTISEGPAYAGYPANGSSRYYWQTQNGTSIDSAYWNNANLFSGNVDSPVTVNGFTYTRGVQRASYTSGSSSFNVFEISRSYQATAYTSGGAGGDGGRGQGADGSAAAGSAGSGGGTNAGTGGTGGTGGAYGANGSTGNSGSAGNNGSGTAGTTGGIAGISYNVANISMTNTGTITGRTS
Physico‐chemical
properties
protein length:342 AA
molecular weight: 33620,70320 Da
isoelectric point:9,17529
aromaticity:0,09064
hydropathy:-0,21725

Domains

Domains [InterPro]
DC_1762
ATT
1–160
DC_1762 DC_0422
IPR007932
RBD
46–188
IPR007932
QIG68319.1
1 342
Architecture
ATT
RBD
ATT 1-160 | RBD 161-342
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG68319.1
1 342
Domain Start End Length (AA) Confidence
N-terminal 1 59 59 0,1470
Central domain 60 264 206 0,9606
C-terminal 265 342 77 0,1403
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-59
Central
60-264
C-terminal
265-342

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y1_20
[NCBI] 		2509571 Uroviricota > Caudoviricetes > Autographivirales > Tepoztlanvirus > Tepoztlanvirus RHphY120
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG68319.1 [NCBI]
Genbank nucleotide accession
MN988488.1 [NCBI]
CDS location
range 38476 -> 39504
strand +
CDS
ATGAGCCTGCATGTAAAGCAAGCAGGAGCATGGTCCACAGTGCAGAACCTGTACGTCAACCAATCTGGCGTATGGGTTCCTGTACAATACGCGTATGTAAAGAACGCGGGCGCATGGGTGCAATACTATTCGTCGGAAGTAGTCGTTACTCTAGCGGCGAACACCAATAACGTCAACATATCGACGTTGTTCACCTCTGCGGTATGGACTAGCTCCACGAACAAGCGTGTCGTCATTAACTCTGGCGTCACCATTGGCTCTACCTCATCTGGCACTCCCGCAATGCGTACGGGTGTAAGTTGGGGCGGACTACTGACAATTGAGAATGCCGGTACTATCCAAGGTGCTGGCGGTGCTGGCAACTCAGGTGCTGGCGGTCATGCACTGATAGCTGATGCATCGGGCGTAATCGTCAAGAATACCGGCATTATCCGCTCTGGCGGTGGTGGTGGCGGTCACGGTGGTAACGGTGGCAATGGCTACTACACCTACACCATATCGGAGGGACCGGCTTATGCTGGTTATCCGGCGAATGGCAGCAGCCGTTACTACTGGCAAACCCAGAACGGCACAAGTATCGACAGCGCGTACTGGAACAATGCCAACCTATTCAGTGGTAACGTAGACAGTCCGGTTACGGTTAATGGCTTCACGTACACTCGCGGCGTACAGCGCGCAAGCTATACGAGTGGAAGTAGCTCATTCAACGTATTCGAAATCAGCCGGTCGTACCAAGCCACAGCTTACACTTCGGGTGGTGCAGGTGGCGACGGCGGGCGCGGCCAAGGCGCAGACGGATCGGCAGCAGCCGGTTCTGCGGGTTCCGGTGGCGGCACTAATGCTGGTACTGGCGGTACTGGCGGAACGGGTGGAGCGTATGGCGCGAACGGCTCAACGGGCAATAGCGGCAGTGCTGGCAATAACGGCTCTGGTACAGCCGGAACTACCGGTGGCATCGCTGGTATTAGCTATAACGTTGCTAACATTAGCATGACAAACACAGGCACAATCACGGGACGAACATCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ed7a3f68324bbf70bb015161df2ec39660ffbfa62307e55ed51df7c917b06cfa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7539
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank