Protein

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Genbank accession
AUR94831.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSCEDYPTAQTAKTFKLDAETVNEVVTLEQDRTSEASDGKTKKTLWGIENDATNQRDEFEQLASDQRDSFEASFSSQFNFKRIGNISDYAGQSLPEADKLNSYQFPDDSGDWYAPEQGQSFPIIIPADPTVSGSGWSLVNGLTKSEADGTYLAINDISDYTYRVYESVGDMLSSSTEVGYKYSTGITIWLRVSGDGSDISHFEPKNKVHASDFGGSQADLELAYASFSYIVISETYTVSDFTLACATEFTDNAKLIVSGSFAWDGQIYAPVREIIDSSAITSWSIGDSIETINPAWFSDGVGPSEGVMVVRGKGSGRTLVGTGNGYCHIDGYRAAELTTSAIGGTVIGPFAGASATSLDLCSIGGYGSLRGKELVPGTGVFESTFGKNVTTWGVGAFQDGTYHENSTAMGALAGRNIPTSVGLTLYGYRCAINAGPIINGLILGQNAALVLNLGLTDTDTTNVCIAGSGAAQDMTRGKRVTSFGDISSRYNQDGDDITNIGYLTGTTPGSPDVSRTINVGSSARSSADDTITVGNNLINSIPGRMYLGDSKTTSVSLQGVYNSTIASSANVYVNEFGQLFRSTSTEKFKEIIEDVSLEWALKTLEFKPILYKPTENALSSDWSYYGYSAEQVYSIDPRYAHLSRDVVGKKVVEGEALLTEEGEKQYDSDGELIKAPDVDVPIYSDDYTPSGVMYERIVVAQQLIIKDLLGRVETLESKLG
Physico‐chemical
properties
protein length:720 AA
molecular weight: 77364,36920 Da
isoelectric point:4,41118
aromaticity:0,09583
hydropathy:-0,26042

Domains

Domains [InterPro]
DC_0489
STR
1–677
DC_0489
IPR030392
CHP
584–719
IPR030392
AUR94831.1
1 720
Architecture
STR
CHP
STR 1-677 | CHP 678-719 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AUR94831.1
1 720
Domain Start End Length (AA) Confidence
N-terminal 1 217 217 0,9929
Central domain 218 519 303 0,9637
C-terminal 520 720 200 0,9467
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-217
Central
218-519
C-terminal
520-720

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 1.198.B._10N.286.54.F4
[NCBI] 		1881258 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUR94831.1 [NCBI]
Genbank nucleotide accession
MG592568.1 [NCBI]
CDS location
range 27050 -> 29212
strand +
CDS
ATGAGCTGTGAAGATTACCCAACCGCACAAACAGCAAAGACGTTTAAGCTTGATGCTGAGACTGTAAATGAAGTTGTCACGCTAGAGCAAGACAGAACAAGTGAAGCTAGTGACGGCAAAACAAAGAAAACCCTATGGGGAATTGAGAATGATGCGACAAATCAGCGTGATGAATTTGAGCAGCTAGCATCTGACCAGCGTGATAGTTTTGAGGCTAGCTTTAGCTCTCAATTCAATTTTAAACGAATTGGTAATATTTCAGATTACGCAGGGCAATCATTACCAGAGGCCGATAAGCTTAATTCTTATCAGTTCCCTGATGATTCTGGTGATTGGTACGCGCCAGAGCAAGGTCAATCGTTTCCTATTATAATCCCTGCCGACCCTACAGTTTCCGGCAGTGGTTGGAGCTTGGTTAATGGGTTGACTAAGAGTGAGGCAGATGGTACCTATTTGGCAATTAATGACATTTCAGACTATACGTACAGAGTTTATGAAAGTGTAGGTGATATGTTATCTTCATCTACAGAAGTAGGGTATAAGTACTCTACAGGAATTACAATTTGGTTAAGAGTTTCAGGGGACGGCTCTGACATATCGCATTTTGAGCCAAAAAATAAAGTTCACGCATCAGATTTTGGTGGTAGCCAAGCAGACCTAGAGTTAGCTTATGCATCCTTTAGTTATATTGTAATCTCCGAAACATACACTGTTAGTGATTTTACATTAGCATGTGCGACGGAATTTACTGACAATGCAAAACTGATAGTGTCAGGGTCTTTTGCATGGGATGGTCAAATTTATGCGCCAGTAAGAGAAATCATAGACTCATCGGCTATAACATCTTGGAGTATTGGCGACTCGATAGAGACTATAAATCCCGCATGGTTTAGCGATGGTGTTGGCCCAAGCGAAGGGGTAATGGTGGTAAGAGGTAAGGGATCAGGGAGAACTTTGGTTGGTACTGGTAACGGTTATTGCCACATTGACGGGTATAGAGCTGCCGAGCTTACGACGTCCGCAATAGGAGGTACTGTGATAGGTCCATTTGCAGGAGCGTCGGCAACTTCGTTAGATTTATGCTCAATCGGTGGTTATGGATCGCTTCGCGGTAAGGAGTTGGTCCCTGGGACCGGTGTCTTTGAGTCAACTTTTGGTAAAAACGTCACAACTTGGGGTGTGGGAGCCTTTCAAGATGGGACTTATCATGAAAACTCAACAGCAATGGGTGCGCTTGCTGGGCGAAACATACCTACAAGTGTCGGTCTAACCTTGTATGGATACCGATGTGCAATTAATGCCGGTCCTATTATTAATGGATTGATTCTAGGTCAAAATGCGGCGTTAGTTCTCAATCTAGGGTTGACAGATACAGATACCACCAATGTATGTATTGCCGGCTCTGGCGCAGCGCAGGATATGACTAGGGGTAAGAGAGTTACCTCTTTTGGTGATATATCCTCGCGATACAATCAAGATGGTGACGATATAACTAATATCGGCTATCTGACAGGTACTACTCCTGGATCACCAGACGTTTCAAGAACAATTAATGTCGGTTCTAGTGCTAGGTCGAGTGCTGATGACACTATTACCGTGGGTAATAATCTGATTAACAGCATTCCGGGTAGGATGTACCTTGGTGATAGTAAGACGACCTCTGTATCACTACAAGGAGTGTACAACAGTACAATAGCGTCATCAGCTAATGTGTATGTGAATGAGTTCGGGCAATTGTTCAGAAGTACATCCACAGAAAAATTCAAAGAGATCATTGAGGATGTTAGTCTTGAGTGGGCACTTAAAACTCTAGAGTTTAAGCCCATTTTATATAAACCTACTGAGAATGCATTAAGTAGTGACTGGAGTTACTACGGATACAGTGCGGAACAGGTTTACTCGATAGACCCTAGATATGCACACTTGTCGAGGGATGTGGTAGGTAAAAAGGTCGTGGAGGGGGAGGCACTTCTTACTGAGGAAGGCGAGAAGCAATATGACTCGGATGGTGAGTTAATCAAGGCTCCTGATGTTGATGTTCCTATTTATTCTGATGATTACACACCTAGCGGCGTTATGTATGAGAGGATTGTTGTGGCTCAACAACTTATAATAAAGGACTTACTGGGTAGGGTTGAAACTCTGGAATCTAAGTTAGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
64a192bb9cabb33abecfccb3e51f7b866245a3ab98df1c7c7da545e5bfc38f71
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7844
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank