Protein

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Genbank accession
YP_011108491.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,64
Protein sequence
MLEAMLTGRKPLPPSDKPVLGFDYNKGVSTGSTQTVSSNLSTDVVNYGDKSAGYAKGLSLYNKAITITPMAALSFMETENFTVEFWVYVDPGPAGYTTFLTIEYDNGRTFPIRIADSGFGNRLQFSLYAAILGANWSTPINRTTFSGGWHHVAVVRDNGKGRIYYDGQLQPLAAGTGSSYGASSVDVSQYVLKSITKLLIGGNAYNVYIPEFAIWIGAKYNANFTPNKGSLVV
Physico‐chemical
properties
protein length:233 AA
molecular weight: 25207,14320 Da
isoelectric point:8,61377
aromaticity:0,12876
hydropathy:-0,07511

Domains

Domains [InterPro]
IPR013320
STR
41–215
IPR013320
G3DSA:2.60.120.200
STR
55–233
G3DSA:2.60.120.200
G3DSA:2.60.120.200
STR
59–233
G3DSA:2.60.120.200
PF13385
LEC
74–215
PF13385
YP_011108491.1
1 233
Architecture
STR
STR 41-233
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_011108491.1
1 233
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,9385
Central domain 14 212 200 0,4537
C-terminal 213 233 20 0,9763
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-212
C-terminal
213-233

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage PCH45
[NCBI] 		2608368 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108491.1 [NCBI]
Genbank nucleotide accession
NC_091964.1 [NCBI]
CDS location
range 115932 -> 116633
strand -
CDS
ATGCTTGAGGCAATGTTAACAGGTAGAAAGCCACTACCGCCTAGCGATAAGCCTGTATTAGGCTTCGACTACAATAAAGGCGTCAGTACTGGGTCAACTCAAACCGTAAGTAGTAATCTATCGACCGACGTCGTTAACTACGGTGATAAGTCAGCAGGTTATGCAAAGGGGTTGTCGCTTTACAATAAAGCCATTACGATAACCCCAATGGCTGCACTCTCCTTTATGGAAACGGAAAACTTCACCGTTGAGTTCTGGGTCTATGTCGATCCAGGTCCTGCTGGCTATACCACCTTCTTAACTATCGAATATGACAATGGAAGAACATTTCCTATTCGTATTGCCGATAGTGGTTTTGGTAATAGACTTCAGTTCTCTTTGTACGCTGCTATACTCGGGGCTAACTGGAGTACGCCAATTAACCGCACTACTTTCTCAGGTGGATGGCACCATGTAGCCGTTGTCCGTGATAACGGTAAAGGGCGAATCTATTACGATGGGCAGTTACAACCGCTAGCTGCTGGAACCGGTTCATCGTACGGCGCATCTTCAGTGGATGTTTCCCAGTACGTATTAAAATCAATCACTAAGCTATTAATAGGAGGAAACGCATACAACGTCTACATCCCGGAATTTGCTATTTGGATTGGCGCTAAATATAACGCTAACTTCACGCCGAATAAAGGGAGTTTAGTAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f3bd78fece28990492bae04381dbc73288d1fbde18f10ac8998b7af545357f9a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7605
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Type III-A CRISPR-Cas RNA targeting inhibits a nucleus forming jumbophage Malone,L.M. and Fineran,P.C. 2019-09-25 — GenBank