Protein

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Genbank accession
YP_007673981.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MATYDNPRPSSQPIGSTDPAVVKDDLITLDQMVETEETTITTRTGKVRTSLKGITQIINDNIILNIAQVSDPLAFVNGTFDYTFTGFNASTSAIYVYSQNGTFPNQLLIPGVDYTFVDNVTSTITLTSSWDGGVLIAKSFDPLGIGNVPYEGNSFTRAELVARGDLNNGDIVYVTDYGNVRCKIQPVGYVAEVGDFTIGTGQIAQILPNSNGHYLVTYFGAIDDPDDELGNQLSYFSLAAQRADITKTKVLIPPGTTYRLSGTPLTYDITWIFGSNADIKGVGGVSPTFVLDLTILGGRVEYELQGNARSMKYMGDGTFRYQKTIGRGQTSGLLSVCATNGATSLMSTACTSFSSAQTSADGITISTSSKLVCDNPDVPVTGWAGYDEGIIVDTAHPDSNCIARETAICNQFPTCYTLEPYSTFADATGLSVGHGISAGLVPWTGPISAFMYWTRTSNLTKIKKGLVIGDSSIEDGAYLAEAIALPDNCGFSWYNPTDNNMSAYVKYLRDSGQNVFKVGVFNDNNTSVKVLDVKFNTVTYGSSTVTLGEDDKRFLGIKLVNSPDVSSDETKKQQRGSLNEAEKTAALQIARAPKIFKWLSEINIDGEDHAKLHCSPMAQTVWSIFIENGLDPAKYGFIKNASSNWSIKPQELLWMICAAQQEKIDNFESRLAALENANG
Physico‐chemical
properties
protein length:679 AA
molecular weight: 73405,36870 Da
isoelectric point:4,68049
aromaticity:0,09426
hydropathy:-0,14993

Domains

Domains [InterPro]
DC_1559
ATT
2–181
DC_1559 IPR036388 Coil
IPR036388
RBD
565–630
IPR036388
IPR030392
CHP
567–629
IPR030392
IPR030392
CHP
567–678
IPR030392
YP_007673981.1
1 679
Architecture
ATT
RBD
CHP
ATT 2-181 | RBD 553-643 | CHP 644-678 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007673981.1
1 679
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9922
Central domain 233 463 232 0,6978
C-terminal 464 679 215 0,9723
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-463
C-terminal
464-679

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pYD21-A
[NCBI] 		754049 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio sp. YD21
[NCBI] 		728063 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007673981.1 [NCBI]
Genbank nucleotide accession
NC_020846.1 [NCBI]
CDS location
range 10923 -> 12962
strand +
CDS
ATGGCGACCTACGACAATCCAAGGCCTTCATCGCAACCAATCGGCAGCACTGACCCAGCCGTGGTAAAAGACGATCTAATAACACTAGATCAAATGGTAGAGACAGAAGAGACAACCATAACCACACGAACTGGTAAAGTTAGAACGTCACTTAAAGGCATAACACAAATAATTAATGACAATATCATTTTAAATATTGCTCAAGTAAGCGACCCTCTTGCATTTGTTAATGGCACGTTTGATTACACATTTACAGGATTCAATGCGTCAACATCAGCAATATACGTTTACAGCCAAAATGGTACGTTTCCAAATCAACTACTAATACCAGGGGTTGATTACACTTTTGTTGATAATGTCACAAGCACAATCACGCTAACCAGCTCATGGGATGGCGGGGTTTTGATTGCTAAGTCGTTCGATCCACTCGGCATCGGCAATGTTCCGTATGAAGGCAATTCATTTACTAGAGCCGAACTTGTTGCCCGTGGCGATCTTAATAATGGCGATATTGTATATGTTACAGACTATGGCAATGTGAGATGTAAAATTCAACCAGTCGGGTACGTTGCAGAAGTTGGGGATTTTACGATAGGAACTGGGCAGATTGCGCAAATATTACCAAACAGTAACGGACATTACCTTGTTACATACTTTGGTGCGATTGACGATCCAGATGATGAGCTAGGAAATCAGCTTTCCTACTTCTCTTTAGCTGCGCAGCGGGCTGATATCACTAAGACAAAGGTTTTAATACCACCAGGCACAACTTACCGCTTGTCAGGCACGCCATTAACATACGACATTACATGGATATTTGGAAGTAACGCTGACATTAAAGGGGTTGGAGGGGTGTCGCCAACATTCGTTCTGGATCTTACTATACTTGGTGGCAGGGTTGAGTATGAATTGCAGGGCAATGCTAGATCCATGAAATACATGGGCGATGGGACATTTAGATATCAAAAGACTATCGGCAGGGGTCAGACTTCTGGCTTATTAAGTGTTTGTGCTACAAATGGCGCTACATCACTAATGAGCACAGCTTGTACCAGTTTTAGCTCAGCGCAAACATCCGCCGATGGGATAACCATATCAACAAGCTCTAAGTTGGTATGCGATAACCCAGACGTACCTGTCACTGGTTGGGCTGGTTATGATGAAGGCATAATTGTTGATACTGCTCACCCAGACTCAAACTGCATCGCAAGAGAAACGGCAATATGTAACCAGTTTCCGACATGTTACACGCTAGAGCCATACAGTACCTTTGCGGACGCAACTGGACTATCAGTAGGCCATGGCATTAGTGCAGGATTGGTTCCGTGGACTGGCCCAATTTCAGCTTTCATGTACTGGACAAGAACATCTAATCTAACAAAAATAAAGAAAGGTTTGGTAATTGGAGACTCTTCAATTGAGGATGGAGCGTATCTTGCTGAGGCAATTGCACTTCCAGATAATTGTGGTTTTTCTTGGTATAACCCTACAGATAACAACATGAGCGCGTACGTTAAGTATTTGCGCGACTCAGGGCAGAATGTGTTTAAGGTCGGAGTGTTCAACGACAACAATACGTCAGTTAAAGTGCTTGATGTAAAATTTAACACTGTTACGTATGGATCAAGCACCGTCACGCTAGGCGAAGATGATAAAAGATTTCTTGGCATTAAGTTGGTTAACTCTCCTGACGTAAGTTCTGACGAAACTAAGAAACAGCAACGTGGGTCGTTAAATGAAGCCGAAAAAACCGCTGCATTACAAATTGCCAGAGCCCCTAAAATATTTAAATGGTTGAGCGAGATAAATATTGATGGGGAAGATCACGCAAAACTCCATTGTTCACCTATGGCGCAAACAGTGTGGTCTATATTTATTGAAAATGGATTAGACCCTGCAAAATATGGATTTATTAAAAACGCATCAAGCAATTGGTCGATAAAGCCACAGGAATTGCTTTGGATGATTTGCGCAGCTCAACAAGAAAAGATTGATAATTTTGAAAGCCGTTTAGCGGCACTGGAGAATGCAAATGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6ef5785008cfe83627e8588585c599277772695ab53b88f107bc9dae3c8d3d67
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6303
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage pYD21-A Henn,M.R., Wolf,A., Jost,G., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank