Protein

View in Explore
Genbank accession
YP_009195944.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MALNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKIKLTDDKGLTKSYGNITALRDIKEPGYYYIGARTLATLLDKPDMESIDVVLHVVPLDTSSKVVQHLYTLSTNNNQIKMLYRFVSGNSSSEWQFIQGLPSNKNAVISGTNILDISSPGVYFVMGMTGGMPSGVDSGFLDLSVDSNDNRLARLTDAETGKEYTSIKKPTGVYTDWKKEFEPKDMEKYLLSSIRDDGSASFPLLVYTSDNKTFQQAIIDHIDRTGQTTFTFYAQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAIGTDGRNVTGSVVGGNWTSPKTSPSHKELWTGAQSFLSTGTTKNLSDDISNYSYVEVYTKHKTTEKTKGNDDTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGVSFKGSTWTLVDSAVQNSKTQYVTRIIGINMP
Physico‐chemical
properties
protein length:458 AA
molecular weight: 50494,76940 Da
isoelectric point:5,71962
aromaticity:0,09607
hydropathy:-0,43341

Domains

Domains [InterPro]
DC_1773
STR
11–250
DC_1773 IPR057110
DC_0448
STR
195–457
DC_0448
YP_009195944.1
1 458
Architecture
STR
STR 11-458
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009195944.1
1 458
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,7102
Central domain 219 417 200 0,0418
C-terminal 418 458 40 0,9964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-417
C-terminal
418-458

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage phiIPLA-RODI
[NCBI] 		1572703 Uroviricota > Caudoviricetes > Herelleviridae > Kayvirus > Kayvirus rodi
Host Staphylococcus sp.
[NCBI] 		29387 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009195944.1 [NCBI]
Genbank nucleotide accession
NC_028765.1 [NCBI]
CDS location
range 80225 -> 81601
strand +
CDS
ATGGCATTAAATTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTACTCAGGTCAATAACATTGGAGAAGAATTAACAAAAGAAAGAAATATATTTGACATTACCGATGATTTAGTTTATAATTTTAATAAATCACAGAAAATTAAACTAACTGATGATAAAGGATTAACTAAATCTTATGGAAACATAACAGCCCTTAGAGATATAAAAGAACCTGGTTACTATTATATTGGAGCTAGAACATTAGCAACGTTATTAGATAAGCCTGACATGGAGTCTATTGATGTTGTATTACATGTAGTACCTCTTGACACTTCTAGTAAAGTAGTTCAACATTTATATACACTATCTACTAATAATAACCAAATTAAAATGTTATATAGATTTGTCTCAGGAAACTCTAGTTCAGAATGGCAATTTATTCAAGGATTACCTAGTAATAAAAATGCTGTTATATCAGGTACTAATATTTTAGATATATCTTCACCAGGTGTTTATTTTGTTATGGGAATGACAGGAGGTATGCCTAGTGGTGTAGATTCAGGTTTTTTAGATTTAAGTGTAGATTCTAATGACAATAGACTAGCTAGGTTAACTGACGCTGAAACTGGTAAAGAGTATACTAGTATTAAGAAACCTACAGGAGTATACACAGACTGGAAAAAAGAATTTGAACCAAAAGATATGGAGAAATATTTATTAAGTAGTATTAGAGACGATGGTAGTGCATCATTCCCACTTCTAGTTTATACTAGTGATAATAAAACATTCCAACAAGCTATTATAGACCATATAGATAGAACAGGTCAAACAACTTTTACTTTCTACGCTCAAGGTGGTGTGTCAGGTTCACCTATGTCTAATAGTTGTCGAGGATTATTCATGTCTGATACACCTAACACGTCTAGTTTACACGGTGTCTATAATGCTATAGGTACGGATGGTAGAAACGTAACAGGTTCAGTGGTAGGAGGTAATTGGACTTCACCAAAAACATCTCCTTCTCATAAAGAATTATGGACGGGAGCACAGTCATTCTTATCTACAGGAACTACTAAGAATTTATCAGATGATATCAGTAACTATTCTTATGTAGAGGTCTATACTAAACATAAGACAACAGAGAAAACTAAAGGTAATGATGATACAGGTACAATTTGCCATAAGTTTTATCTAGATGGCAGTGGTACTTACGTTTGTTCAGGTACATTTGTATCGGGAGATAGAACAGATACAAAACCACCTATTACAGAGTTTTATAGAGTGGGTGTATCTTTCAAAGGTTCAACATGGACTCTTGTAGATAGTGCAGTACAAAATAGTAAAACTCAATATGTTACAAGAATTATAGGTATTAATATGCCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c2775b91279dee5980e369ecd099d58a172df9d66ef1fc611f1db280eb32ea6d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8066
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50