Protein

View in Explore
Genbank accession
NP_064768.1 [GenBank]
Protein name
gp29
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
Protein sequence
MANVEHSSLTGSALHEPKGTATANSGEVYVANGSGSGTWQPIHRHLGAATAFSSTSPYAYTIDTDTVEKFLSFPVSSSHVEGFTVLTSPNLRFRYDDPTEITSLINVTMSSSQAGGVGHAVQWALFKNGVEIVGSRAIRTISSGSWGSISVTGVTTLNQNDYIEIKTKADADNVDVNYANIYVSIIGMSA
Physico‐chemical
properties
protein length:190 AA
molecular weight: 20081,93630 Da
isoelectric point:5,37688
aromaticity:0,08421
hydropathy:-0,07789

Domains

Domains [InterPro]
DC_0529
STR
2–186
DC_0529
NP_064768.1
1 190
Architecture
STR
STR 2-186 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_064768.1
1 190
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,8862
Central domain 13 179 168 0,0057
C-terminal 180 190 10 0,9954
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-179
C-terminal
180-190

Taxonomy

  Name Taxonomy ID Lineage
Phage Roseobacter phage SIO1
[NCBI] 		2905867 Uroviricota > Caudoviricetes > Zobellviridae > Siovirus > Siovirus americense
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_064768.1 [NCBI]
Genbank nucleotide accession
NC_002519 [NCBI]
CDS location
range 36874 -> 37446
strand -
CDS
ATGGCTAACGTAGAACATTCCTCTCTTACTGGTAGTGCATTGCATGAACCTAAGGGTACAGCTACAGCTAACAGTGGTGAAGTATATGTTGCTAATGGTTCTGGTAGTGGTACATGGCAACCTATCCATAGACACCTAGGTGCTGCTACTGCTTTCTCTTCTACTTCTCCTTATGCGTACACCATTGATACGGATACAGTTGAGAAGTTCCTATCCTTCCCAGTCTCTTCTTCTCATGTAGAAGGTTTCACTGTTCTCACATCCCCTAACCTTCGTTTTAGATACGATGACCCCACAGAGATTACAAGTCTCATTAACGTAACTATGTCATCCTCACAGGCTGGTGGTGTAGGTCACGCAGTCCAGTGGGCATTGTTTAAGAACGGTGTGGAGATTGTAGGCTCAAGAGCAATTCGTACCATCTCCTCAGGAAGCTGGGGTTCTATTAGTGTAACAGGTGTTACTACCCTCAATCAAAACGATTACATTGAGATCAAGACTAAAGCAGATGCAGATAACGTAGATGTAAACTACGCAAACATCTATGTCTCTATTATTGGAATGAGTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
01fd2ccd8c2fc6313cb621122e6ba043c56954fcd36470e3ba53f4cb6246a555
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7833
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages Rohwer,F.L., Segall,A.M., Steward,G., Seguritan,V., Breitbart,M., Wolven,F. and Azam,F. 2000 — GenBank