Protein

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Genbank accession
YP_009984702.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTTITNLPETSKVNGSDYLVLDQPDKTVKSTVSNFLTDTGVVLATQLKDTDGADLIQSSNGNTVQEELNNNLLNDREQWRRSLAEAGLTLVDGSFEDGATLNNNTDAVWYIAGGQCYTWGGAFPKAVPADSTPTSTGGVGPSAWASVGDATLRGDLNKTNGLSYIGTASSVSELSSISGSIGDSIILDSYVSGFNFGGGIMVAVSADTAIDNIVTFPGNGVVWKRKFFNGSVDVYDAGYTGTEDLAVFINTINAAGFDCVVPVSGEITTPIIFDIAKGALIGKNKCTLTESSSVTGDYYLTIINTGADYTNRDAINATSLISGVSFVGKGSRKLAIGGSTSGEVSELRISNSGFISTAGIEFLDNAYRILFDKCALSRSFTNSVIFNSPANSGEVIRFNHCWMVDNGGPFTFVNGQFIFDGCSLPAGKKSGYFDPAVALSDNATVVFTNGNIEYQPGQSFVGFTVEGSSRLTVSNSTILLPDGYTSVPIVSNGDGVVSLNNCSLSLYGNTTIATGFPTRQLIGGASKKVMSRGCYPRAGFITSNWNLGSIVSPYINSISNGSGQFLNTSNWTLSQTGTGVVTATTANDVPNDLMFSTSFVLSVPSAEAAANFTQTIIDCEPGRYFQLGFWAKNLTTTLASIRFLDQQGNAVADSIGYNIPVGDTFNFYALVDSVPQGAYKAEVNFNVGNSIGSLTIHNVVYGLI
Physico‐chemical
properties
protein length:705 AA
molecular weight: 74158,53940 Da
isoelectric point:4,45739
aromaticity:0,09787
hydropathy:0,04596

Domains

Domains [InterPro]
DC_0018
ATT
1–250
DC_0018
G3DSA:2.10.10.80
ATT
89–159
G3DSA:2.10.10.80 DC_0715
IPR040775
RBD
93–150
IPR040775
YP_009984702.1
1 705
Architecture
ATT
STR
ATT 1-250 | STR 251-659 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009984702.1
1 705
Domain Start End Length (AA) Confidence
N-terminal 1 246 246 0,9973
Central domain 247 555 310 0,9934
C-terminal 556 705 149 0,9901
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-246
Central
247-555
C-terminal
556-705

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_vPM_PD06
[NCBI] 		2315527 Uroviricota > Caudoviricetes > Stephanstirmvirinae > Justusliebigvirus PD06 >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009984702.1 [NCBI]
Genbank nucleotide accession
NC_052653 [NCBI]
CDS location
range 67830 -> 69947
strand -
CDS
ATGTCAACTACAATTACTAATTTACCGGAAACATCAAAAGTTAATGGTTCTGATTACCTAGTTTTAGACCAACCTGATAAGACCGTTAAAAGCACAGTTTCTAATTTTCTTACTGACACTGGGGTGGTTTTAGCCACCCAGTTGAAAGATACAGATGGAGCAGATTTAATACAATCCTCAAATGGTAATACTGTTCAGGAAGAGTTGAATAACAATCTTCTTAATGATCGTGAACAGTGGCGTCGTAGTCTTGCTGAAGCGGGGTTAACACTTGTTGATGGTAGCTTTGAGGATGGTGCTACATTAAATAATAATACTGATGCTGTTTGGTATATTGCAGGTGGACAGTGCTATACATGGGGTGGTGCTTTCCCTAAAGCTGTTCCCGCTGACTCAACCCCTACATCAACCGGTGGTGTTGGTCCTAGTGCGTGGGCTAGTGTTGGTGATGCCACCCTGAGGGGTGATTTAAATAAAACAAATGGCTTGTCTTATATAGGAACTGCATCATCAGTTTCTGAGTTATCATCAATATCAGGATCAATTGGTGATTCCATAATACTTGATTCGTATGTGAGCGGTTTTAACTTTGGTGGTGGTATTATGGTAGCTGTTAGCGCGGATACAGCTATAGACAATATTGTTACCTTCCCCGGAAACGGTGTGGTATGGAAAAGAAAATTCTTCAATGGTTCCGTGGATGTGTATGATGCTGGTTATACTGGAACCGAAGATTTGGCGGTATTCATCAACACAATAAACGCTGCCGGGTTTGACTGTGTAGTCCCTGTTTCAGGAGAGATAACAACACCAATTATTTTCGACATAGCAAAAGGCGCACTTATTGGAAAAAATAAATGTACTTTAACAGAATCTTCATCTGTAACCGGTGACTACTACCTAACCATCATTAATACAGGCGCTGATTACACTAACAGAGATGCAATTAACGCAACTTCTTTGATTAGTGGTGTGTCATTCGTCGGGAAAGGTTCCAGGAAATTGGCTATCGGTGGTTCTACCAGTGGTGAAGTATCAGAGTTAAGAATCTCTAATAGTGGGTTTATCTCAACTGCCGGGATTGAGTTTCTTGATAATGCATATCGTATTCTTTTTGATAAATGTGCGTTGTCCAGAAGTTTTACAAATTCTGTTATTTTCAATTCACCAGCAAATTCCGGTGAAGTTATAAGATTTAATCATTGTTGGATGGTTGACAACGGTGGACCTTTCACATTTGTTAATGGTCAATTTATATTCGATGGCTGCTCTCTGCCAGCAGGTAAAAAATCAGGATATTTTGACCCTGCTGTTGCGCTATCCGATAACGCAACAGTGGTTTTCACAAACGGTAACATTGAGTACCAACCTGGTCAGAGTTTCGTTGGGTTTACTGTGGAGGGCAGTTCACGATTAACCGTCAGTAATTCGACGATACTACTCCCAGACGGGTATACCAGTGTACCTATTGTTAGCAACGGCGATGGGGTTGTTAGCCTAAATAATTGCTCGTTATCCCTCTATGGGAATACAACGATTGCTACTGGATTTCCCACAAGACAGTTGATAGGTGGCGCGAGCAAAAAAGTAATGTCCAGAGGGTGCTATCCACGGGCAGGATTTATCACAAGTAACTGGAATTTAGGGAGCATTGTAAGCCCTTATATTAATAGCATCAGTAATGGCTCAGGACAGTTTTTAAACACATCTAACTGGACACTATCGCAAACTGGAACAGGAGTTGTCACTGCTACTACAGCAAACGATGTTCCTAATGATTTAATGTTTTCAACTTCTTTTGTTTTATCTGTACCATCAGCTGAGGCAGCAGCTAATTTCACCCAAACAATCATTGATTGTGAGCCTGGTCGTTATTTTCAGCTTGGTTTTTGGGCTAAAAATCTAACAACAACCCTGGCGTCAATTAGATTCCTGGACCAGCAAGGAAATGCTGTTGCGGATTCCATAGGGTATAACATCCCAGTAGGCGACACATTCAATTTTTATGCTTTAGTGGATTCAGTCCCTCAAGGAGCATACAAGGCTGAGGTGAATTTTAATGTTGGGAACTCGATTGGCAGTTTAACAATACACAATGTAGTGTATGGTTTAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9949de396af87c15903aeb81efd448c453aa697a32bbe294eec1b77f13b159fa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7968
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50