Protein

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Genbank accession
YP_009793776.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 0,55
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATTPKTVRTYALDGTKKDFTIPFEYLARKFVVVTLIGATRRELILNTEYRFTTNTTITTNKAWGPADNFDLIEIRRLTSATERLVDFADGSILRAYDLNISQVQSLHIAEEARDLTADTIGVNNDGDLDARARKIVNLADGVNDGDAVNMRQQRQWAGSALNSANASAASAQASEASRQAALAQAQASAASAGQSSTYASNSQNSASNSQTSRLASEAARDASITARDLSRAWASKAEDQVVASGLYSSYHYSRKSAASASASLTSANNSANSASFSTTEANRATTQADRAKTEADKLGNMNALGGAIREVNTTGKKVEINTGWEWNSDVIAVDGFRSRSSSSIEFNAQINGRLGASFTGSLSVGGATTLQNTTVAGLTVNTGAQFKNGNVQVFAPKASDNAHVWFYNPDGATRGILYADKDKTVRMQAGEVVCATFAPDGGTTLNNVSAGNVTARATAKTQGGIENTGRVASYRNGVGANASMYTNCHFMAQTDDGTAPAYGFHRGGSYALALYLSGNSLFMMDSAGLNREVLNNTNLGSWMVSMGEQGVGSYAFCRSGVTATYGVDVAGGNLTYGSTGANGGSVPGTWRSRGWAGGGNHTLFQRIA
Physico‐chemical
properties
protein length:609 AA
molecular weight: 63993,50590 Da
isoelectric point:8,56148
aromaticity:0,07553
hydropathy:-0,33957

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604 Coil
DC_0319
STR
1–606
DC_0319
YP_009793776.1
1 609
Architecture
ATT
STR
ATT 1-131 | STR 132-606 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009793776.1
1 609
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,8132
Central domain 262 460 200 0,5105
C-terminal 461 609 148 0,9602
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-460
C-terminal
461-609

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Pf1 ERZ-2017
[NCBI] 		2761363 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ghunavirus
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009793776.1 [NCBI]
Genbank nucleotide accession
NC_047874.1 [NCBI]
CDS location
range 33640 -> 35469
strand +
CDS
ATGGCTACTACACCAAAGACGGTGCGGACCTACGCTCTCGATGGCACCAAGAAAGACTTCACGATCCCCTTCGAGTATCTCGCTCGGAAGTTCGTTGTGGTCACCTTGATCGGTGCAACTCGACGTGAGCTGATCCTGAACACCGAGTACCGCTTCACTACCAACACGACCATCACCACGAACAAGGCATGGGGACCGGCTGACAACTTCGACCTGATCGAGATTCGCCGACTGACCTCTGCAACTGAGCGTCTGGTGGACTTCGCTGATGGTTCGATCCTTCGGGCCTACGACCTGAACATCTCGCAGGTTCAATCCCTGCACATCGCTGAGGAAGCCCGTGACCTGACCGCTGACACAATCGGCGTGAACAACGATGGTGACCTCGACGCCCGTGCCCGTAAGATCGTCAACCTCGCCGATGGTGTGAACGACGGTGATGCGGTCAACATGCGACAACAGCGCCAATGGGCAGGCTCTGCATTGAACTCGGCGAACGCCAGTGCTGCCTCTGCGCAAGCCTCTGAGGCGTCTCGTCAGGCTGCCTTGGCTCAGGCCCAAGCGAGCGCTGCAAGTGCTGGTCAATCGAGCACCTATGCGAGCAACTCTCAGAACTCTGCAAGCAACTCTCAGACTTCCCGTCTGGCCTCTGAGGCTGCCCGTGACGCTTCCATCACCGCCCGTGATTTGTCCCGAGCGTGGGCCTCGAAGGCTGAGGATCAGGTCGTTGCATCTGGTCTCTATTCGTCCTACCACTACAGCCGAAAGTCGGCAGCAAGTGCATCGGCGAGTCTGACCTCTGCGAACAACTCTGCGAACTCTGCGAGTTTCTCTACGACCGAGGCCAACCGGGCAACCACTCAGGCCGACCGTGCGAAGACCGAGGCTGACAAGCTGGGCAACATGAACGCGCTCGGTGGGGCGATCCGTGAAGTAAACACGACTGGCAAGAAGGTAGAGATTAACACCGGCTGGGAGTGGAATTCTGACGTAATTGCGGTAGACGGGTTCCGCTCAAGGAGTTCGTCCTCCATCGAATTCAATGCCCAGATCAACGGGAGACTTGGCGCTTCATTCACTGGGAGCCTTTCAGTTGGAGGTGCTACCACCCTACAGAACACCACTGTAGCCGGTCTAACAGTGAACACTGGTGCCCAGTTCAAGAACGGCAACGTGCAGGTATTTGCCCCGAAGGCATCGGATAACGCCCACGTCTGGTTCTACAACCCTGATGGGGCAACCCGAGGGATTCTCTATGCTGACAAAGACAAAACGGTACGGATGCAGGCAGGTGAGGTAGTGTGTGCGACCTTCGCTCCAGATGGCGGGACCACACTAAACAACGTATCTGCTGGGAATGTTACGGCCCGTGCTACTGCAAAAACACAAGGTGGGATTGAGAATACCGGACGTGTCGCGTCCTACCGCAACGGTGTAGGCGCAAACGCTTCCATGTATACCAACTGCCACTTCATGGCTCAGACCGATGATGGAACTGCCCCAGCCTATGGGTTCCACCGTGGAGGCTCATACGCCCTCGCACTGTACCTGAGCGGAAACAGTCTGTTCATGATGGACTCGGCAGGTCTGAACCGTGAGGTCCTGAACAACACGAACTTGGGTTCTTGGATGGTTAGCATGGGTGAGCAAGGTGTCGGCTCGTATGCGTTCTGCCGTTCCGGCGTGACTGCTACCTACGGCGTTGACGTTGCTGGTGGAAACCTGACCTACGGCTCGACTGGCGCGAACGGTGGCTCTGTCCCCGGAACTTGGCGTTCCCGTGGCTGGGCTGGCGGTGGTAACCATACCCTGTTCCAGCGCATCGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5928a75748182ddad1276d02d878a5fba660ada78f77f87b4c464cc6845a3097
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6783
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Antibacterial composition for extension of chilled fish shelf life and decreasing of risk of food-borne infections, bacteriophage strains for its preparation Zulkarneev,E.R., Aleshkin,A.V., Rubalsky,O.V., Kiseleva,I.A., Rubalskii,E.O. and Lebedev,S.N. 2019-10 — GenBank