Protein

View in Explore
Genbank accession
XAI71036.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,57
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGAVQINGWSSETQGLQKRPPTKIIKRIYPTGALGVKPLVHMINRDSSEQYFVSFFGSGIAVHDLAGNEYVVRGYNGYANCANPRDDLRLITVADYTFVTNRKTVTQMGSTLTLAGQPNVTTRALVNIRGGQYGRTMQILINGGVYGNIQMPNGSAEKVPAGQPYAGMNQVDMTDANWIASTMAAQINAALNASGWSATAGAGWVMITAPGPGAFASIQTKDGYGDQLMNGFIYQVQTFNKLPAQAPDGYLVEVTGESARTGDNYWVQYSLAGKVWKEVAKPGIVAGFNNATLPHALIRASDGNFDWTPLTWDTRQCGDDGTNPMPSFIGDRINDIFFFRNRLGFIAGENVIMSRTAKYFNFFPASVSALSDDDPIDVAISHNRVSILKYAVPFAEQLLLWSDQAQFVLSSAGVLSSKTIELDLTTEFDVSDGARPFGIGRGVYFAAPRASYTSLKRYYAIQDVSNVKSAEDVSAHVPSYLPNTVFNLAGSGTENFVSMISNGQPGNLYIYKFLYLDETLQQQSFSHWTFGTNVKILAAYSIGSYMYLMLDRPEGIMMERVEFTQSTIDIAQEPYRTYMDQKKLIQIGAYDIDAHTSSVSIESILGGLPHTDSVFYTIDAQGVMQRHEGPWPSGSKITFPGNRAGEYVVFGREYEFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNFENSGAFEINVNNGSTQYVYPMSGGRLGTQTFLGELALGTGQFKFPVTGNAQAQRVTISSANPNPLNIIGCGWEGNYIRRSGGI
Physico‐chemical
properties
protein length:800 AA
molecular weight: 87617,47580 Da
isoelectric point:5,83204
aromaticity:0,11250
hydropathy:-0,21000

Domains

Domains [InterPro]
IPR058003
TTP
1–799
IPR058003
XAI71036.1
1 800
Architecture
TTP
TTP 1-799 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAI71036.1
1 800
Domain Start End Length (AA) Confidence
N-terminal 1 169 169 0,8620
Central domain 170 368 200 0,1670
C-terminal 369 800 431 0,2124
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-169
Central
170-368
C-terminal
369-800

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Lepni01
[NCBI] 		3138536 No lineage information
Host Pseudomonas syringae
[NCBI] 		317 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAI71036.1 [NCBI]
Genbank nucleotide accession
PP179331 [NCBI]
CDS location
range 25915 -> 28317
strand +
CDS
ATGGGACTCGTTTCGCAATCCGTTAAGAACCTCAAAGGAGGTATCTCGCAGCAACCGGACATCCTTCGGTTCTCCAACCAAGGTGCCGTCCAGATCAATGGCTGGTCCTCGGAGACCCAAGGTCTACAGAAGCGACCACCGACCAAGATCATCAAGCGGATCTACCCGACTGGTGCGCTGGGCGTGAAGCCTCTGGTCCACATGATCAACCGGGACTCCTCGGAGCAATACTTCGTGTCGTTCTTTGGGAGCGGCATTGCGGTCCACGACTTGGCTGGCAATGAGTACGTGGTCCGTGGCTACAACGGCTACGCCAACTGCGCGAACCCTCGGGATGACCTGAGGCTGATCACCGTGGCCGACTACACCTTCGTGACCAACCGTAAGACCGTCACTCAGATGGGCTCTACGCTGACCCTCGCTGGGCAACCCAACGTGACCACTCGTGCGCTGGTGAACATCCGTGGTGGGCAGTATGGCCGGACCATGCAGATCCTCATCAATGGGGGCGTCTACGGGAACATCCAGATGCCTAACGGTTCCGCTGAGAAGGTGCCCGCTGGGCAACCCTACGCTGGCATGAACCAAGTGGACATGACGGATGCCAACTGGATCGCCTCAACGATGGCCGCTCAGATCAACGCTGCGCTCAACGCCTCGGGCTGGAGTGCCACCGCTGGTGCTGGATGGGTCATGATCACTGCACCTGGCCCCGGAGCGTTCGCTTCAATCCAGACCAAGGATGGCTACGGTGACCAGCTCATGAACGGCTTCATCTACCAAGTCCAGACGTTCAACAAGTTGCCCGCTCAGGCCCCTGATGGATACCTCGTGGAAGTCACTGGCGAGTCCGCTCGTACAGGCGACAACTACTGGGTCCAGTACAGCCTCGCTGGTAAGGTCTGGAAGGAAGTGGCGAAGCCGGGGATCGTAGCAGGGTTCAACAACGCAACGCTCCCACACGCCCTCATCCGGGCCTCTGATGGCAACTTCGATTGGACTCCGCTGACGTGGGACACGCGCCAATGTGGTGACGATGGGACCAACCCGATGCCATCCTTCATTGGTGATCGGATCAACGACATCTTCTTCTTCCGTAACCGTCTGGGCTTCATTGCAGGCGAGAACGTGATCATGTCGAGGACTGCTAAATACTTCAACTTCTTCCCGGCCTCTGTGAGCGCTCTTAGCGATGACGATCCAATCGACGTGGCTATCTCTCACAACCGAGTGTCGATCCTGAAGTATGCCGTTCCGTTCGCTGAGCAGTTGCTGCTGTGGTCGGACCAAGCTCAGTTCGTATTGTCGTCCGCTGGGGTTCTCTCCTCGAAGACCATTGAGCTGGACTTGACGACTGAGTTCGATGTCTCCGATGGTGCCCGTCCCTTCGGGATCGGTCGTGGGGTTTACTTCGCTGCACCTCGGGCCTCGTACACTTCCCTGAAGCGCTACTACGCGATCCAAGACGTGAGCAACGTGAAGTCCGCTGAGGATGTCTCTGCGCACGTTCCGAGCTACCTGCCGAACACCGTGTTCAATCTGGCAGGCTCAGGCACCGAGAACTTCGTGTCGATGATCAGCAATGGTCAACCGGGCAACCTGTACATCTACAAGTTCCTGTACCTCGACGAGACCCTCCAGCAACAATCGTTCTCTCACTGGACCTTCGGGACCAACGTCAAGATCCTCGCTGCGTACTCCATCGGCTCGTACATGTACCTGATGCTGGACCGCCCTGAGGGCATCATGATGGAGCGGGTCGAGTTCACTCAGTCCACCATCGACATCGCTCAGGAGCCCTACCGGACCTACATGGACCAGAAGAAGCTCATCCAGATCGGTGCCTATGACATCGACGCGCACACCTCATCGGTGAGCATTGAGAGCATCCTTGGGGGTCTCCCTCACACCGACTCCGTGTTCTACACGATTGACGCTCAAGGCGTGATGCAGCGCCACGAGGGACCATGGCCTTCGGGTTCCAAGATCACCTTTCCGGGCAACCGGGCAGGCGAGTACGTGGTCTTCGGTCGTGAGTACGAGTTCCAATACGAGTTCTCCAAGTTCCTCATTAAGCAGACCGCTGACGATGGCTCCACCTCCACTGAGGACATCGGTCGGCTCCAGCTTCGGAGAGCGTGGTTGAACTTCGAGAACTCTGGTGCCTTCGAGATCAACGTCAACAACGGCTCCACTCAGTACGTCTACCCGATGTCTGGTGGTCGCCTTGGGACTCAGACGTTCCTCGGTGAGCTGGCTCTCGGCACTGGTCAGTTCAAGTTCCCGGTGACGGGCAACGCCCAGGCACAACGAGTGACGATCAGCTCTGCCAACCCGAACCCACTCAACATCATCGGATGCGGATGGGAGGGCAACTACATTCGCCGTTCTGGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
68416cfc8b37ebbc64451261b8f61c048d483c07248b8e0df6bc6a470233209f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2776
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50