Protein

View in Explore
Genbank accession
URQ03062.1 [GenBank]
Protein name
tail fiber adhesin
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPTPTTGAISIGTVRDYFSRTGAASLSQYYRGGGIVPDITENAHVPTSGAISLNDLRGVYRLSTYTTSFTTTYNTTVSTSNTTSRSTSRSTTRSTAYSTTRSTAYTTSWTTSRTTSVAKGSYTTTYATSRATTRSTAYNTTRSTAYTSTWTTSWTTTYNTTRSTSNTTSRSTQVAV
Physico‐chemical
properties
protein length:176 AA
molecular weight: 18970,22130 Da
isoelectric point:10,48619
aromaticity:0,10227
hydropathy:-0,62102

Domains

Domains [InterPro]
DC_1816
STR
1–104
DC_1816
URQ03062.1
1 176
Architecture
STR
STR 1-104 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA8
[NCBI] 		2938951 No lineage information
Host Vibrio sp.
[NCBI] 		678 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URQ03062.1 [NCBI]
Genbank nucleotide accession
ON190024.1 [NCBI]
CDS location
range 29005 -> 29535
strand +
CDS
ATGCCAACTCCTACAACAGGTGCGATTTCAATCGGTACCGTTCGTGATTATTTCAGTAGAACCGGCGCTGCTTCATTGTCTCAGTACTACAGAGGCGGCGGTATTGTTCCTGATATTACTGAAAATGCTCACGTACCAACTTCAGGCGCGATTAGCTTGAATGACTTGCGCGGTGTATATCGCTTGTCAACGTATACGACATCATTTACGACAACATACAACACCACTGTATCAACATCGAATACGACTTCGCGTAGTACATCAAGAAGTACAACTAGAAGTACTGCATACAGTACAACTCGCTCGACTGCGTATACTACTAGTTGGACAACTAGCCGAACTACGTCGGTGGCGAAAGGATCGTATACGACCACATACGCAACTTCACGTGCTACAACTCGTTCAACTGCGTATAACACGACACGTTCAACTGCTTATACGTCTACATGGACGACATCGTGGACAACGACGTACAACACAACAAGATCAACATCAAACACAACTTCTCGAAGCACGCAAGTTGCAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
19bbb12f435ae10439898e9a75a461587dceaaebf80647148b16e67723cf5a1b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4800
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a broad-host-range bacteriophage that prevents Vibrio alginolyticus infections in juvenile turbots farming He,Z. 2023-05-12 — GenBank