Protein

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Genbank accession
YAA50898.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIPKLTPYTGQVANPDGSQTQTEFTQNMFNQLSYEANLATELDATIDGMNNAVDEVSQNTAIAESSAIAAEAAASSAGYQGLWPATGGSALKGGTWQTQVSGTPTGEYYTALQNTSIDPVGDNVNWRVDVTGSYVNQAQEELINGGIFPVNGTVKNGDTVPSGTTHLRVLVGGNPAIVAMSPYLSGVLSSLTETGALVDGSPVEFSSTSSSTVKSVEDLKRLNYPVGVTVKVKDRAGYWFSIESSGSGNDYDSIQLDNGLFANLEPVPFIDSFAFGCNGTDDTQPFNRALQYSAENNVAIILINQPVLQSPYDSSCYFRVPNGATLKGFNNGNGGSRIQIKPTEPREFGMTIHQLTSLSGPAPTMADSVVLEDFAVRVFGGTGVGGNDVDVDIVMPLVAAQFHCKFNRLKASGGKRHGILMARVWYAEASSLFAFENKGSGLTIGKHPDITGFADGAVNGMEIPNCVAHSNDLDQTFQVDVQEEIGIGLSLWGTLFNLSLPGMKTEKNKGAGFMDMSNYGNWSSDQHYTEANGSHGFYIANTASAGKTWEATNIQLQQDESVKIKQDPLTRAKLGIAFAVGGNNIDVSGVNGRQVKVDAKNCSFTIRQALASLIVDYDVVYQQEGNLQTFTNTLFFIGNQESDVPFNYQIVFVPTVTTTSTDTIDTNLYINGVGQGTSQFAGPFTAYEPVVIKSFSGNTGVHYENRQVASYNESCPGLWQVRSKRF
Physico‐chemical
properties
protein length:727 AA
molecular weight: 77851,44520 Da
isoelectric point:4,67691
aromaticity:0,09354
hydropathy:-0,22228

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA50898.1
1 727
Domain Start End Length (AA) Confidence
N-terminal 1 284 284 0,9961
Central domain 285 604 321 0,9775
C-terminal 605 727 122 0,9820
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-284
Central
285-604
C-terminal
605-727

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Xw-2
[NCBI] 		3459119 Viruses > unclassified bacterial viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA50898.1 [NCBI]
Genbank nucleotide accession
PX096588.1 [NCBI]
CDS location
range 6337 -> 8520
strand +
CDS
ATGACAATACCAAAGTTAACACCATACACCGGACAAGTTGCCAATCCTGACGGCAGCCAAACCCAAACTGAGTTTACGCAAAATATGTTTAACCAGTTGAGCTATGAAGCCAACTTAGCAACAGAGCTTGACGCGACAATCGACGGAATGAATAACGCAGTCGATGAGGTAAGCCAGAATACCGCTATCGCAGAAAGCTCGGCTATCGCAGCGGAGGCGGCAGCATCGTCCGCAGGCTATCAAGGTTTATGGCCTGCCACTGGCGGTAGTGCACTTAAGGGTGGGACATGGCAAACTCAAGTGAGTGGCACGCCTACAGGTGAATATTACACTGCACTCCAAAATACTAGCATTGACCCTGTTGGGGATAATGTTAATTGGAGGGTTGACGTTACTGGTAGTTATGTTAATCAAGCGCAAGAAGAATTGATTAACGGCGGCATATTTCCAGTTAATGGCACTGTTAAAAATGGCGATACGGTACCATCAGGCACTACACACCTTCGCGTTTTGGTTGGTGGTAATCCAGCTATTGTTGCAATGTCTCCTTATTTGAGTGGTGTTCTTAGCTCATTAACTGAAACTGGTGCTTTGGTCGATGGGTCTCCTGTTGAATTTTCATCAACGTCATCCTCCACAGTAAAATCAGTTGAGGATTTAAAAAGGCTAAACTACCCTGTCGGCGTTACAGTTAAGGTAAAAGACCGCGCCGGATACTGGTTCTCAATTGAGTCGTCGGGGTCGGGTAATGATTACGACTCTATACAACTAGATAATGGATTATTTGCAAATTTAGAGCCCGTTCCTTTCATTGATTCATTCGCTTTTGGTTGTAATGGAACAGATGATACCCAGCCATTTAACAGGGCGTTGCAGTATAGCGCAGAGAACAATGTTGCGATTATCTTAATAAACCAACCAGTGTTGCAAAGCCCATACGACTCAAGTTGTTACTTTAGGGTGCCAAATGGCGCTACACTTAAAGGTTTTAATAATGGTAATGGCGGATCTCGTATTCAAATAAAACCAACCGAACCTCGCGAGTTCGGAATGACTATACACCAACTAACCAGCCTTTCGGGCCCAGCACCAACTATGGCTGACTCTGTTGTTCTAGAGGACTTTGCAGTCAGAGTGTTTGGTGGCACGGGGGTCGGTGGGAATGATGTCGATGTAGACATAGTGATGCCTTTAGTTGCGGCTCAATTTCATTGCAAGTTTAACAGGTTAAAAGCAAGTGGTGGTAAGCGTCACGGCATCCTTATGGCTCGTGTGTGGTACGCCGAAGCAAGCAGCCTGTTCGCTTTTGAAAATAAAGGTAGCGGTTTAACTATAGGCAAGCATCCAGATATAACCGGATTTGCTGATGGTGCTGTTAATGGAATGGAAATCCCTAACTGTGTTGCTCACTCCAACGACCTTGACCAAACATTTCAGGTTGACGTGCAGGAAGAGATTGGGATAGGCCTTAGTTTGTGGGGTACACTTTTCAATCTTAGCTTGCCAGGAATGAAAACCGAGAAGAACAAAGGTGCTGGTTTCATGGATATGTCGAACTATGGTAACTGGTCATCAGACCAGCACTACACTGAGGCCAACGGCTCACACGGTTTTTACATTGCGAACACAGCTAGCGCAGGAAAAACGTGGGAGGCAACAAACATTCAGCTCCAGCAGGATGAGTCGGTCAAGATTAAGCAAGACCCACTTACCCGAGCTAAATTAGGTATAGCTTTCGCGGTGGGTGGAAACAACATTGACGTCTCTGGTGTGAATGGACGACAAGTTAAGGTAGATGCGAAGAATTGCTCATTCACTATACGTCAAGCGCTGGCATCTTTAATTGTTGATTACGATGTCGTTTATCAGCAAGAGGGTAACTTACAAACATTCACTAACACGCTATTCTTTATTGGAAACCAAGAGAGTGACGTGCCGTTTAATTACCAGATTGTTTTTGTTCCAACCGTTACAACTACAAGCACGGATACAATTGACACCAATCTATATATAAACGGAGTTGGTCAGGGAACATCGCAATTTGCAGGTCCATTTACTGCTTACGAACCTGTAGTTATTAAGTCGTTCTCTGGTAACACTGGCGTGCATTATGAAAATAGGCAAGTGGCCTCCTACAATGAGAGTTGCCCAGGTCTGTGGCAGGTTAGATCTAAGAGGTTTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
972486faeaae836afeacc883afd91cb0f6638447d7a5e97707ea9280c0f5911e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7654
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50