Protein

View in Explore
Genbank accession
YP_001642392.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSEYNKTILTNEGIDLARRANKGTATFSLTRGVSSTDNLSGKTVEELQNLTTLPSIQQSVILNDVVNTTDNPDTVLGIRMTFDNQNLKTGYNVHTVGIYAKEPGKNEILYGIATAKTPEYIPDFSEQTLFKFDFLMYLVIGRTDKVTVEVSPDDVYRKKDTYNKTEIDAKVSDAVSKLNNKDAEILNSLNDYKQENKTYHQNLEQQISINFDTKADKTTVEQQLGTKADKANTYTKDEVNSKVAPKADKGYVDSELNKKADKATTYTKDEVNSKIAGQIKSVNGHTANASGAVTLPTLKANTLTGYDVKNKTATFDNNAHFDANGIFSRWPVDQGVIGQLADAINAKLPIEEGPANTDLLMNAGNKIVYWHGNGDAVKNLPPMNNKKYFFAVKLFDTNWGSVTVIDQDGGYWINTANGNVWTGWRSVVTNEHLKKLKFVKQSLDQSGNTFQDTKFVTQEADGTYKINIFDSDWTANKVAWLLKNTSSYNIGANTNLNDIKAPGLYHCSGASNIANLPAGEDSWFNMVVNSDNWNGSQALYATNHNQLYIRTWTNSGFKAWRRIANIDDLTNQSITSITDYDVANEGWHNTQVGKFNAEGHFANFLVDAGALKPIAHSINVLNSNALMKSGGTMNKYCWIIWNGNGANGSKDGRIGGLQWTGATDSIQIYGDNNAADNLDLAIQLGDDNSNHISIRDKDGTERAAITADGHFTGSTDWARVGGTGLNNPTLGRYIQHSNTWNDIIGQNNGQMALTAIRDDSNGSENTIGQHSAGVAFGGGDTKGVLSVAWDKPQARIIGGNGNSPTWKKDIAWKDDINNANPSVTVINSFDVANVKEGPHQTWPVKQPWLVDQMALHPFADAINALNTNLSTLRTELMNLKRRVDYNSPQGEFNNTTVNINDLRSTGIYRFANCYIQNGPYPTNNTHWIYLQVTVFDANTVYQTLYEGDNMYGRKSSSPTNWGKWHKYLNQEV
Physico‐chemical
properties
protein length:972 AA
molecular weight: 107400,55630 Da
isoelectric point:5,86041
aromaticity:0,09259
hydropathy:-0,59084

Domains

Domains [InterPro]
DC_2008
STR
1–347
DC_2008 DC_1143 DC_2127 Coil cd19958
cd19958
STR
487–564
cd19958 DC_0678
YP_001642392.1
1 972
Architecture
STR
STR
STR
STR 1-347 | STR 430-565 | STR 693-970 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001642392.1
1 972
Domain Start End Length (AA) Confidence
N-terminal 1 668 668 0,9341
Central domain 669 885 218 0,2529
C-terminal 886 972 86 0,2329
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-668
Central
669-885
C-terminal
886-972

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus prophage Lj771
[NCBI] 		139871 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus johnsonii
[NCBI] 		33959 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001642392.1 [NCBI]
Genbank nucleotide accession
NC_010179 [NCBI]
CDS location
range 34450 -> 37368
strand +
CDS
ATGTCAGAATATAATAAAACAATTTTAACCAATGAAGGTATCGACTTAGCCCGCAGAGCTAACAAGGGTACGGCAACATTCTCTTTGACGCGAGGTGTTTCATCAACTGATAACTTATCAGGAAAGACTGTTGAAGAGCTTCAAAACTTAACTACGTTGCCCAGTATTCAGCAATCAGTAATCTTGAACGATGTGGTAAATACTACTGACAATCCAGATACTGTTTTGGGTATCAGAATGACTTTCGATAATCAGAACTTGAAGACTGGTTACAATGTGCATACTGTTGGTATTTATGCAAAAGAACCGGGGAAAAATGAAATTCTTTACGGTATAGCTACGGCTAAGACACCAGAATATATTCCAGATTTTAGCGAGCAAACTTTATTTAAGTTTGATTTCTTAATGTATCTAGTAATTGGTAGAACAGATAAGGTAACTGTAGAAGTTAGTCCTGATGATGTTTACCGTAAGAAAGATACATATAATAAGACTGAAATTGATGCTAAAGTTTCAGATGCCGTATCTAAGCTAAATAATAAAGATGCTGAAATCCTTAATAGCTTGAATGATTATAAGCAAGAAAATAAGACTTATCATCAAAATCTTGAACAACAAATCAGCATAAACTTTGATACTAAAGCCGATAAGACTACTGTAGAACAACAACTTGGAACAAAAGCTGATAAGGCCAATACTTACACCAAAGATGAAGTGAATAGCAAAGTCGCTCCTAAAGCTGATAAAGGTTATGTAGATAGTGAACTGAATAAAAAAGCTGATAAAGCGACTACTTATACTAAAGACGAAGTAAATAGCAAAATTGCTGGGCAGATTAAGTCAGTAAATGGGCACACTGCTAATGCTAGTGGTGCAGTAACCTTGCCAACTTTGAAAGCTAATACGCTTACCGGCTATGATGTAAAGAACAAGACAGCTACTTTTGACAACAACGCTCATTTTGATGCAAATGGCATCTTTTCAAGATGGCCTGTAGATCAAGGCGTTATCGGGCAACTTGCTGATGCAATTAATGCGAAGCTACCAATTGAAGAAGGACCTGCCAATACTGACCTATTAATGAATGCAGGTAATAAAATAGTTTATTGGCATGGCAATGGGGATGCAGTTAAGAATTTACCGCCAATGAATAATAAAAAATATTTTTTTGCTGTTAAGTTATTTGATACTAATTGGGGTTCTGTAACTGTTATAGATCAAGACGGAGGTTACTGGATAAATACAGCGAATGGCAATGTTTGGACTGGTTGGCGTTCAGTCGTCACAAATGAACATCTTAAAAAGTTGAAATTTGTAAAGCAGTCATTAGATCAAAGTGGTAATACTTTCCAAGATACTAAGTTTGTAACGCAAGAAGCAGATGGAACATATAAGATTAACATTTTCGATAGCGACTGGACTGCTAATAAGGTTGCATGGCTATTGAAAAATACTAGTTCTTATAACATTGGTGCTAATACTAACTTAAATGATATTAAAGCTCCTGGTCTTTATCATTGTTCCGGTGCATCTAATATAGCGAATCTTCCTGCTGGCGAGGATAGCTGGTTTAATATGGTCGTTAACAGTGATAATTGGAATGGGTCACAAGCTTTATATGCAACAAATCATAATCAACTCTATATTAGGACTTGGACAAATAGTGGTTTTAAGGCATGGCGAAGAATAGCAAATATAGATGACTTAACTAACCAAAGCATTACTTCAATTACTGATTATGATGTAGCTAACGAAGGTTGGCACAACACTCAAGTTGGAAAATTCAATGCAGAAGGGCACTTTGCAAACTTTTTAGTTGATGCAGGTGCATTAAAACCAATTGCGCATTCAATTAATGTTTTAAATTCTAACGCATTAATGAAATCTGGCGGTACTATGAACAAGTATTGTTGGATTATTTGGAACGGTAACGGTGCAAATGGCAGTAAAGATGGACGTATTGGTGGCTTGCAATGGACGGGTGCTACAGATAGTATTCAAATTTATGGCGATAATAATGCTGCTGATAATTTGGATTTAGCTATTCAGTTGGGTGACGATAATTCTAACCATATCTCAATCAGGGATAAGGACGGAACAGAAAGAGCAGCAATTACAGCCGACGGTCACTTTACTGGTAGTACAGATTGGGCACGTGTAGGTGGAACAGGACTTAACAACCCTACTTTAGGTAGATACATTCAGCATAGTAATACTTGGAACGACATTATCGGTCAAAACAATGGGCAAATGGCTCTTACAGCTATTCGTGATGATTCTAACGGGTCAGAAAATACAATTGGTCAACACTCTGCTGGAGTTGCTTTTGGTGGTGGAGATACAAAAGGTGTCTTAAGTGTTGCTTGGGACAAACCACAGGCAAGAATTATTGGTGGTAATGGCAATTCACCTACATGGAAAAAAGATATTGCTTGGAAAGATGATATTAATAATGCCAATCCTTCGGTTACGGTAATTAACAGTTTTGACGTTGCTAATGTGAAAGAAGGACCTCATCAGACTTGGCCTGTAAAACAGCCTTGGCTGGTGGATCAGATGGCATTACACCCGTTTGCAGACGCAATCAATGCGTTGAATACTAATTTAAGTACTTTAAGAACAGAATTAATGAATTTGAAACGGCGTGTTGACTATAACTCTCCGCAAGGTGAATTTAACAACACAACCGTCAATATTAATGACTTGAGGAGTACTGGTATTTATCGTTTTGCAAATTGTTATATTCAAAATGGACCATATCCGACTAATAATACTCACTGGATTTATCTACAGGTGACAGTATTTGATGCTAATACGGTTTATCAGACGCTCTATGAAGGAGATAACATGTATGGTAGAAAGTCATCTAGTCCTACTAATTGGGGTAAATGGCATAAATATCTTAACCAAGAAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
711baf2a213273cf22147fa10590eac839275010ce3aeeff3102d5db7cb79e0d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6239
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genomics of the late gene cluster from Lactobacillus phages Desiere,F., Pridmore,R.D. and Brussow,H. 2000 10998330 GenBank
The role of prophage for genome diversification within a clonal lineage of Lactobacillus johnsonii Denou,E., Pridmore,R.D., Ventura,M., Pittet,A.-C., Zwahlen,M.-C., Berger,B., Barretto,C., Panoff,J.-M. and Bruessow,H. 2008 18515417 GenBank