Protein

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Genbank accession
YP_009838318.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAETITVRIKGAEYAAHDPNGAYREMDSIFVGNSKFVCVQDVAENLNIELTNTDYWREIYTLEINSEILVPNGVTSIKGPLAFDLLTSKITFPVMNVVHEGADGDKLVTKFDGTEEVSGIDPAAVSYIIIKADGSIEAVEDPSAGMIIVTMSWAGADLADRPAQADMVDGDFLLSREVGATRRLGGVSLLSEFGAVEGDPASVYTALTLADKHMVNGATLLIDGNYEINQQAQLNSIYNLSILGGSLKKTAVYSGEYIIRADYCHGIRVMTNLEGKKDPLSNSIDAGEQGIWFRKCQGFIAQGMHLKHFGDAGLRASSGGYDNATVPANTDSFDGRILGCNFEDCYQNTMTHSGTTRLLWNGNTFHAAKGSAMKVASRVKDTYGCVIIGNFIDTCESVVQTQGANDVLMASNYIRKSGQTISIGANQDGVSSTYPDPNPTTNVVLKSNHIIDSTARLAYIENRGYTFSNVSHLPEGGNIYIQDNVFNMEKDSGSWPSDHVIRLFTHTANADNGDIIRANIFNYLEISGNTFHGGSKFLDGDIAMFDGARLVVKNNRFMGFEGTFMDITLNTTDDKDMSGTEVVVEDNNIEATSGFYLTTIGQIVDRLRIARNTVRGLTSWGVYAAAGKSGFSKELELIANEYYGADTAINTRATFQVTCGREGHASLPDVDGTLRMMDNIVHWKAASGFSGRAYYVPNAGKITDYMCDNNRYKGTDVPASALASFDSNDLGARAVA
Physico‐chemical
properties
protein length:736 AA
molecular weight: 79679,14410 Da
isoelectric point:4,86044
aromaticity:0,08696
hydropathy:-0,18451

Domains

Domains [InterPro]
IPR011050
STR
190–487
IPR011050 IPR011050
IPR011050
STR
192–487
IPR011050 IPR011050
YP_009838318.1
1 736
Architecture
STR
STR
STR 190-487 | STR 503-685 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009838318.1
1 736
Domain Start End Length (AA) Confidence
N-terminal 1 200 200 0,9894
Central domain 201 716 517 0,9863
C-terminal 717 736 19 0,6943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-200
Central
201-716
C-terminal
717-736

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage YC
[NCBI] 		2267403 Uroviricota > Caudoviricetes > Pantevenvirales > Campanilevirus > Campanilevirus YC
Host Vibrio coralliilyticus P1
[NCBI] 		909421 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio coralliilyticus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009838318.1 [NCBI]
Genbank nucleotide accession
NC_048709 [NCBI]
CDS location
range 68747 -> 70957
strand -
CDS
ATGGCCGAGACTATTACAGTAAGGATTAAAGGCGCAGAGTATGCAGCACATGATCCTAACGGTGCCTACCGCGAGATGGATTCCATTTTCGTCGGAAACTCAAAGTTCGTTTGTGTGCAGGACGTCGCTGAGAACCTCAACATTGAACTAACCAATACGGACTATTGGCGTGAGATTTACACGCTTGAAATCAACTCAGAGATCCTAGTACCTAATGGTGTGACCAGCATTAAAGGCCCGCTAGCGTTCGACTTGTTGACGTCGAAGATCACATTCCCTGTTATGAACGTGGTTCATGAAGGTGCAGACGGTGATAAACTGGTGACCAAGTTTGACGGCACGGAAGAAGTGTCCGGCATTGATCCGGCTGCTGTCTCATACATTATCATCAAGGCTGACGGTTCTATCGAAGCAGTTGAAGACCCTAGTGCTGGGATGATCATTGTAACTATGAGCTGGGCTGGTGCTGACTTGGCTGACCGTCCGGCGCAAGCTGATATGGTAGACGGTGACTTCCTTCTTAGTCGTGAAGTGGGCGCGACTCGCCGCCTAGGTGGTGTGAGCCTTCTTAGTGAGTTCGGTGCCGTTGAAGGTGATCCGGCCAGTGTGTACACGGCTCTGACTCTAGCCGATAAGCACATGGTCAATGGTGCTACCTTGTTGATTGATGGCAACTACGAGATCAACCAACAAGCTCAGCTAAACAGCATCTACAACCTATCAATCCTAGGTGGCTCGCTTAAGAAGACGGCGGTTTACTCCGGCGAGTACATCATTCGCGCCGACTACTGTCACGGCATCCGCGTGATGACTAACCTCGAAGGTAAGAAGGACCCGCTGTCCAACTCTATCGACGCTGGTGAACAAGGCATCTGGTTCCGTAAGTGTCAGGGCTTCATCGCTCAGGGGATGCACCTCAAACACTTCGGTGATGCAGGCTTGCGTGCGAGCTCAGGTGGTTATGACAACGCAACGGTTCCGGCCAACACTGACTCGTTTGACGGGCGTATCCTAGGCTGTAACTTTGAAGACTGCTACCAGAACACCATGACACACTCAGGTACTACGCGCCTGTTGTGGAACGGTAACACCTTCCACGCTGCTAAAGGCTCTGCTATGAAGGTGGCTAGTCGCGTTAAGGACACTTACGGTTGTGTGATCATTGGTAACTTCATTGACACCTGTGAATCCGTAGTGCAGACGCAGGGTGCTAATGACGTGCTCATGGCCTCAAACTACATCCGTAAGTCAGGCCAGACAATCTCTATTGGTGCTAACCAAGACGGAGTGTCCTCAACGTACCCTGATCCTAACCCAACAACCAACGTTGTACTGAAGTCGAACCATATCATTGATTCGACGGCGCGACTAGCGTACATTGAGAACCGTGGTTACACTTTCTCTAACGTCAGTCACTTGCCTGAAGGTGGTAACATCTACATTCAGGATAACGTGTTCAACATGGAGAAAGATAGCGGCTCATGGCCTAGTGATCACGTTATCCGCCTGTTCACTCACACGGCGAACGCAGACAATGGTGACATTATCCGTGCCAACATCTTCAACTATCTTGAAATCAGCGGCAACACGTTCCACGGTGGTTCGAAGTTCCTTGATGGTGACATTGCCATGTTTGACGGTGCTCGCCTAGTGGTTAAGAACAACCGCTTCATGGGCTTCGAAGGTACGTTCATGGACATCACGTTGAACACTACTGACGACAAGGACATGTCAGGCACCGAAGTTGTGGTAGAGGACAACAACATCGAAGCCACAAGTGGTTTCTACCTAACCACAATCGGCCAGATTGTTGACCGCTTACGCATCGCCCGCAACACTGTGCGTGGTCTGACATCTTGGGGTGTGTACGCTGCCGCTGGTAAGAGTGGGTTCTCTAAGGAACTTGAACTGATCGCCAACGAGTACTATGGTGCGGATACAGCCATTAACACCCGTGCTACTTTCCAAGTAACTTGTGGTCGTGAAGGTCATGCGTCACTACCTGACGTTGACGGTACGTTACGTATGATGGACAACATTGTCCATTGGAAAGCTGCAAGCGGGTTCAGTGGTCGTGCATACTACGTACCTAATGCTGGTAAGATCACGGACTACATGTGTGACAACAACCGCTATAAAGGTACAGACGTTCCGGCTTCGGCGCTGGCATCGTTTGATAGTAATGATCTGGGCGCACGGGCTGTCGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83585dac06cbdd530a8d7e85b588d8c467eff533dab5f9e47b94a9374a3ca790
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7362
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The genome of Vibrio coralliilyticus phage YC Benler,S. 2020-11-12 — GenBank