Protein

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Genbank accession
UPT52979.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,55
Protein sequence
MPPAIIGAVIAVGAAGAAAASFITITTALVIGAVATAAGALLTKKPSVDFSAYKNQQERKQVLRASASAKVVVYGKIMGSGLLAFAEEEAGSQDDKEKINLVLVLAGHPLNDIGDIYLGDDLITSYMEHVSYEWINDPTTVNQYLLKNCPSWKSDMIGKGLSYLRITLKFNQEKFPSGLPNIRVVKYGWKVYDPRTGKTQYSNNAALVILHYYRHYLKRADSEINWEQFKVAANISDELVSVGTNGEKEPRYTINGEFDIDEPSSKILDAMFEACGGEPTFEGGKHGMLVGAYYGPADLEIDESFIAGDIRIVPETSYKERINTITGTFIDPKQMYSEVDYPQVTVKEWVTEDGIEIKQDSSYRFVTSEFQSQRLANILLRRKRVGRTIELPLNMKGFRVRPGRYVKLTIKSLGIKKVEFRVTKWSFDPKSGINVTLRQDSVSLWDDAIGKPVERPDLTDLPTGGIAAPQNLRVVSEPVGEVVQALLQWTNMGTFVANTVVVRRGGNIVYTIEVPAPAQLARLQGLPFGDYTATVIAKAANGAVSPASGIAFTIAAPPVPIGAEITTNNNSITIIPKYSTANAYGTMCEFWMSNLPVSIAEVEKKATFKGVAGQFTIDGLRHGTTYHFYVRTINAYGKSAFIHFEAKTTASVTDILALLDNAITDQQLVKDLRDKIDSMLTDVEVGAIVDEKTETIIKDQEALAKKITQVEAKADGNTSAVQTVASAQAGLDKEVRSSWYTKAQINGVGGGFGLSVVLQPDGSVISQFVVDADIFAILAKGGGKINPFVVKNGVVYMNKAMMDNAEIGAVIAKYIDVKVLNAATINSSTINGGTISAARIISSGNPPTFELTTDGRLTARSANISGTINATSGEFRGDVYANNGWFKGTVYADKVEGDITKTYVLSIGSTLTIPAISQFSRYVSIPNISVSAAENESITIWVLVDGNKVIDITAGGVYAAPKSAGWAGPLPAGRSMTIEYRKPIGGEKGYYIPNPPVFVFKQ
Physico‐chemical
properties
protein length:1002 AA
molecular weight: 108383,26270 Da
isoelectric point:6,36383
aromaticity:0,08683
hydropathy:-0,05579

Domains

Domains [InterPro]
DC_0754
STR
1–962
DC_0754
IPR032876
ATT
317–425
IPR032876 IPR003961 IPR003961 IPR053171
IPR036116
STR
527–645
IPR036116 IPR015406
IPR003961
STR
557–639
IPR003961
IPR057587
ATT
560–659
IPR057587
IPR013783
STR
591–655
IPR013783
IPR003961
STR
614–641
IPR003961
UPT52979.1
1 1002
Architecture
STR
ATT
STR
ATT
STR
STR 1-316 | ATT 317-425 | STR 426-559 | ATT 560-659 | STR 660-962 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT52979.1
1 1002
Domain Start End Length (AA) Confidence
N-terminal 1 875 875 0,8068
Central domain 876 991 117 0,2845
C-terminal 992 1002 10 0,9492
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-875
Central
876-991
C-terminal
992-1002

Taxonomy

  Name Taxonomy ID Lineage
Phage Hafnia phage yong3
[NCBI] 		2928840 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Hafnia paralvei
[NCBI] 		546367 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT52979.1 [NCBI]
Genbank nucleotide accession
OM868075.1 [NCBI]
CDS location
range 24634 -> 27642
strand +
CDS
ATGCCACCGGCAATTATTGGCGCAGTTATCGCAGTAGGTGCGGCTGGTGCAGCCGCGGCGAGCTTTATAACTATTACTACCGCGCTTGTCATTGGGGCGGTAGCGACTGCTGCTGGAGCCTTGCTAACAAAGAAGCCCAGCGTTGACTTTAGCGCATACAAAAACCAACAAGAACGTAAACAGGTTCTTCGTGCTTCTGCATCCGCAAAGGTTGTAGTATACGGGAAGATCATGGGTTCAGGCTTGCTTGCGTTTGCGGAGGAGGAAGCTGGATCACAGGACGATAAAGAAAAGATCAATCTTGTACTGGTATTAGCCGGACACCCTTTGAACGACATTGGGGATATTTACCTCGGGGATGATCTGATAACTAGCTATATGGAACATGTTAGTTATGAATGGATTAATGATCCCACAACGGTAAACCAATATTTACTGAAAAACTGCCCTTCATGGAAGTCCGATATGATTGGCAAAGGGTTGTCGTACCTTCGCATAACATTGAAGTTCAATCAGGAAAAGTTCCCGTCTGGGTTGCCTAACATTCGTGTTGTCAAATACGGTTGGAAGGTGTATGACCCGCGCACAGGTAAGACGCAGTATAGTAACAATGCCGCATTAGTTATCTTGCACTACTACCGTCATTATTTGAAACGTGCAGACAGCGAAATTAACTGGGAGCAGTTCAAGGTCGCTGCAAACATTTCAGATGAGCTTGTAAGCGTCGGCACCAATGGCGAGAAGGAACCACGCTACACTATTAACGGTGAGTTTGATATCGATGAGCCTAGCTCTAAGATTTTAGATGCTATGTTTGAAGCTTGTGGCGGGGAACCCACATTTGAAGGCGGCAAGCATGGGATGCTAGTTGGTGCATACTACGGCCCAGCAGACCTTGAAATTGATGAAAGCTTCATTGCAGGTGATATCCGTATTGTGCCAGAAACATCTTACAAGGAGCGAATCAACACCATTACAGGAACATTTATTGATCCTAAGCAGATGTATTCTGAAGTAGACTACCCGCAAGTAACCGTTAAAGAATGGGTAACTGAGGATGGAATTGAAATTAAGCAGGATAGCAGCTACCGCTTTGTGACTAGCGAATTCCAGTCCCAGCGCTTAGCGAATATATTACTGCGTCGTAAGCGTGTTGGACGCACAATCGAGCTACCTTTAAACATGAAGGGGTTCCGTGTACGCCCAGGCCGTTACGTGAAGCTTACTATTAAATCTTTAGGCATTAAAAAGGTTGAGTTTCGTGTAACTAAATGGTCTTTCGATCCTAAGTCTGGTATTAACGTTACACTACGTCAGGACTCAGTCTCACTGTGGGATGATGCAATCGGTAAACCTGTTGAGCGTCCGGATCTGACAGATTTGCCCACAGGTGGTATAGCTGCTCCGCAAAACTTGCGCGTAGTAAGTGAACCAGTTGGCGAAGTCGTTCAGGCGTTACTGCAATGGACTAACATGGGGACGTTTGTTGCGAACACTGTGGTTGTGCGTAGAGGTGGCAACATTGTATACACCATTGAAGTTCCTGCCCCAGCGCAGCTAGCACGCTTGCAAGGGCTTCCCTTTGGGGATTACACCGCTACTGTAATAGCGAAGGCTGCTAACGGTGCTGTGTCCCCTGCTTCGGGTATTGCGTTCACTATTGCGGCTCCACCTGTACCAATTGGTGCAGAAATTACAACTAACAACAACTCAATCACTATCATTCCTAAGTATTCGACAGCTAATGCTTATGGAACTATGTGTGAGTTTTGGATGTCCAATTTGCCTGTATCGATTGCAGAAGTGGAAAAGAAAGCAACGTTCAAAGGTGTTGCTGGACAGTTCACAATTGATGGTCTGCGTCACGGTACGACATATCATTTCTATGTACGTACTATTAACGCTTATGGTAAATCTGCGTTCATTCATTTTGAAGCTAAAACTACTGCAAGCGTTACAGATATATTGGCGTTGTTGGACAATGCTATTACCGATCAGCAATTAGTCAAGGACTTGCGCGATAAGATTGATAGCATGTTAACCGATGTAGAAGTTGGTGCTATTGTTGATGAAAAGACCGAAACTATTATTAAGGATCAAGAAGCGTTAGCTAAAAAGATTACGCAGGTTGAAGCTAAAGCAGACGGTAATACCTCAGCAGTTCAAACAGTTGCAAGCGCACAAGCTGGGCTAGATAAGGAAGTTCGTTCAAGCTGGTACACCAAAGCACAGATTAACGGTGTAGGTGGCGGGTTCGGTCTTAGCGTAGTTCTGCAACCGGATGGAAGCGTTATATCGCAATTCGTTGTTGACGCCGATATCTTTGCAATACTTGCAAAAGGTGGCGGTAAGATTAACCCATTTGTGGTTAAGAATGGTGTAGTATATATGAACAAAGCAATGATGGATAATGCTGAAATTGGTGCTGTTATTGCTAAATACATCGATGTTAAAGTTCTGAACGCTGCGACCATTAACAGCTCAACCATCAATGGTGGAACCATTAGCGCGGCTCGTATTATTAGTAGCGGGAACCCTCCTACATTTGAATTAACAACGGATGGACGCCTTACTGCGCGTAGTGCTAACATAAGCGGCACTATTAACGCAACATCCGGTGAGTTCCGTGGTGACGTATATGCTAACAATGGATGGTTTAAAGGTACTGTTTATGCAGATAAGGTTGAAGGGGATATTACAAAGACCTACGTTCTAAGTATTGGGTCTACATTAACCATACCTGCTATTAGTCAATTTTCTAGATACGTTAGCATTCCAAATATAAGTGTCTCTGCGGCGGAGAATGAATCCATAACTATATGGGTACTTGTAGACGGGAACAAAGTTATAGATATTACGGCGGGTGGGGTGTATGCTGCCCCCAAATCCGCGGGATGGGCGGGGCCTCTCCCGGCTGGAAGGTCGATGACAATTGAATATAGAAAGCCCATAGGCGGTGAAAAAGGATACTATATCCCAAACCCTCCAGTCTTTGTTTTCAAACAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1afd55233a110e403acbdf6b34141cdf4b1638e8f19e8ee48c000e3321eb7f8d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7557
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel Hafnia phage yong3 and its protective effects against Aeromonas hydrophila in brocade carp (Cyprinus aka Koi) Pan,L., Li,D., Lin,W., Qu,C., Liu,W., Li,L., Ren,X., Qian,M., Cai,R., Wang,F., Zhou,Q. and Tong,Y. 2022-11-11 — GenBank