Protein

View in Explore
UniProt accession
A0A8S5MG34 [UniProt]
Protein name
Collagen alpha 1(VIII) chain protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MYTKHDWQDGELITKTLMNNMEAGIEDANNRAMTPGPAGADGANGADGKSAFDIWKEQEGNADKTETDFLNSLKGEKGDKGDTGEQGPKGDKGEKGDTGAQGPQGEKGDTGEQGPAGKDGAAGAKGDTGAKITSIEINVNGTAITGTAHLDDESTASITGTYTAGE
Physico‐chemical
properties
protein length:166 AA
molecular weight: 16878,82520 Da
isoelectric point:4,41704
aromaticity:0,03614
hydropathy:-0,99518

Domains

Domains [InterPro]
DC_0791
STR
4–166
DC_0791
IPR050149
Unmapped
35–131
IPR050149
IPR008160
STR
75–131
IPR008160
A0A8S5MG34
1 166
Architecture
STR
STR 4-166
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Siphoviridae sp. ctmAU6
[NCBI] 		2826451 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAD80875.1 [NCBI]
Genbank nucleotide accession
BK014889 [NCBI]
CDS location
range 17408 -> 17908
strand -
CDS
ATGTATACAAAACATGATTGGCAGGACGGAGAACTTATTACAAAAACTCTGATGAATAATATGGAAGCAGGCATTGAAGATGCCAATAATCGAGCTATGACACCGGGTCCGGCTGGAGCTGACGGTGCTAACGGTGCAGACGGTAAATCCGCTTTTGATATTTGGAAAGAACAGGAAGGCAATGCCGATAAAACGGAAACGGACTTCTTAAATTCGCTCAAGGGTGAAAAGGGAGATAAAGGCGACACTGGCGAACAAGGACCAAAAGGCGATAAGGGTGAAAAAGGTGATACCGGTGCTCAAGGTCCGCAGGGCGAAAAAGGCGATACAGGAGAGCAGGGCCCTGCCGGCAAGGATGGCGCAGCTGGTGCTAAAGGTGATACAGGTGCAAAAATTACATCTATCGAGATTAATGTTAACGGTACAGCAATTACCGGCACAGCACATTTAGATGATGAAAGTACGGCATCTATTACGGGCACATATACAGCCGGAGAATAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
93f7ab8cbb68256806f5cec8d543eb793a26379659381e52c42a46457ee7950e
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7610
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50