Protein

View in Explore
Genbank accession
CCI89055.1 [GenBank]
Protein name
protein of unknown function
RBP type
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESRYVKFDPTGTNFPAEITDVQAAIAAISPAGVNGVPDASSTTKGILFLATEQEVIDGTDNTKAVTPATLATRLSYPNATETVYGLTRYSTDDEAIAGVNNESSITPAKFTVALNNAFETRVSTESSNGVIKISSLPQALAGADDTTAMTPLKTQQLAIKLIAQIAPSETTATESDQGVVQLATVAQVRQGTLREGYAISPYTLMNSTATEEYKGVIKLGTQSEVNSNNASVAVTGATLNGRGSTTSMRGVVKLTTTAGSQSGGDASSALAWNADVIHQRGGQTINGTLRINNTLTIASGGANITGTVNMTGGYIQGKRVVTQNEIDRTIPVGAIMMWAADSLPSDAWRFCHGGTVSASDCPLYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGSHLTNPNVNGNDQFGKPRLGVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNDGYEIDPASQRNSKYTLNRPELIGNETRPWNISLNYIIKVKE
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55783,08690 Da
isoelectric point:6,41891
aromaticity:0,06452
hydropathy:-0,38880

Domains

Domains [InterPro]
DC_0176
STR
1–447
DC_0176
IPR015173
STR
246–326
IPR015173 IPR037053 IPR044916
SSF69349
STR
246–326
SSF69349 SSF88874
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 G3DSA:2.160.30.10 IPR011083 IPR027448
CCI89055.1
1 527
Architecture
STR
ATT
STR
STR 1-329 | ATT 330-400 | STR 401-525 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage phiD1
[NCBI] 		1206560 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Tequatrovirus
Host Yersinia pestis
[NCBI] 		632 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
CCI89055.1 [NCBI]
Genbank nucleotide accession
HE956711 [NCBI]
CDS location
range 88117 -> 89700
strand +
CDS
ATGAGTAATAATACATATCAACACGTTTCTAATGAATCTCGCTATGTAAAATTTGATCCAACTGGTACAAATTTTCCAGCAGAGATTACTGATGTTCAGGCTGCTATAGCAGCCATTTCTCCTGCTGGTGTAAATGGAGTTCCTGATGCATCATCAACAACAAAAGGAATTTTATTTCTTGCCACTGAACAGGAAGTTATCGACGGAACTGATAATACCAAAGCAGTTACACCCGCAACGTTGGCAACAAGATTATCTTATCCAAACGCAACTGAAACTGTTTACGGATTAACAAGATATTCAACAGATGATGAAGCGATTGCTGGAGTTAATAATGAATCTTCTATAACTCCTGCTAAATTTACTGTTGCCCTTAATAATGCATTTGAAACACGAGTTTCAACTGAATCATCAAATGGAGTTATTAAAATTTCATCTCTACCGCAAGCATTAGCTGGCGCAGATGATACTACTGCAATGACTCCATTAAAAACACAGCAGTTAGCTATTAAATTAATCGCACAAATTGCTCCTTCTGAAACCACAGCTACCGAATCGGACCAAGGCGTTGTTCAATTAGCGACAGTAGCTCAAGTTCGTCAAGGAACATTAAGAGAAGGCTATGCAATTTCTCCTTATACGCTAATGAATTCTACTGCTACTGAAGAATATAAAGGCGTAATTAAATTAGGAACACAATCAGAAGTTAACTCGAATAATGCTTCTGTTGCGGTTACTGGCGCAACTCTTAATGGTCGTGGTTCTACAACGTCTATGAGAGGCGTAGTTAAATTAACTACAACTGCCGGCTCACAGAGTGGAGGCGATGCTTCATCAGCATTAGCTTGGAATGCTGATGTTATCCACCAAAGAGGTGGTCAAACGATTAATGGAACACTTCGCATTAATAATACGCTCACAATAGCTTCAGGCGGAGCAAATATTACCGGAACAGTTAACATGACCGGTGGTTATATTCAGGGTAAGCGTGTTGTAACACAGAATGAAATAGATAGAACTATTCCTGTCGGAGCTATTATGATGTGGGCGGCAGATAGTCTTCCTAGTGATGCTTGGCGCTTCTGCCATGGCGGAACTGTTTCAGCATCAGATTGTCCATTATATGCTTCTAGAATTGGAACAAGATACGGCGGAAGCTCATCAAATCCTGGATTACCTGATATGCGCGGTCTTTTTGTTCGTGGCTCTGGTCGTGGCTCTCACTTAACAAATCCAAACGTTAATGGTAATGACCAATTTGGTAAGCCTAGATTAGGTGTAGGTTGTACCGGTGGATATGTTGGTGAAGTACAAAAACAGCAGATGTCTTATCATAAACACGCTGGCGGATTTGGTGAGCATGATGATTCTGGAGCATTCGGTAATACCCGTAGATCAAATTTTGTTGGTACACGTAAAGGACTTGACTGGGATAACCGTTCATACTTCACCAATGACGGATATGAAATTGACCCAGCATCACAACGAAATTCCAAATACACACTAAATCGTCCTGAATTAATTGGAAATGAAACACGTCCATGGAACATTTCTTTAAACTACATAATTAAGGTAAAAGAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9dfdea0e8611792eb79b0aee13da89d344b2d8589c7648641b6578d39fb53956
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6858
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of five bacteriophages specific for Yersinia species Skurnik,M., Nawaz,A., Happonen,L., Butcher,S. and Mattinen,L. 2012 — GenBank