Protein

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Genbank accession
AVP40014.1 [GenBank]
Protein name
baseplate assembly protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDTADLARLLENLLRIGTVAEVRHSTPPAVRVQTGGITTTWRPWAERRAGQTRTWNPPTVGEQVLLFCPSGDPSNAVILCGIPTADNDVPSNDPNRTVTLYPDGALTSYDHAAGLLTVQGVKTVFLEATANVLVKAPATTFDGDVTVKGLFSFENGMAGQGGKHGNQISGDLAHAGGTLSSNGVVLHDHDHGSVQRGGDWTEGTR
Physico‐chemical
properties
protein length:205 AA
molecular weight: 21590,75070 Da
isoelectric point:5,55427
aromaticity:0,05366
hydropathy:-0,26390

Domains

Domains [InterPro]
IPR037026
ATT
1–87
IPR037026 G3DSA:6.20.150.10 IPR044033
IPR013046
Unmapped
6–203
IPR013046
IPR006531
STR
16–81
IPR006531
DC_1459
STR
68–205
DC_1459
AVP40014.1
1 205
Architecture
ATT
STR
ATT 1-87 | STR 88-205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVP40014.1
1 205
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,7367
Central domain 92 194 104 0,0135
C-terminal 195 205 10 0,9952
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-194
C-terminal
195-205

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage RsoM1USA
[NCBI] 		2991867 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia solanacearum
[NCBI] 		305 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVP40014.1 [NCBI]
Genbank nucleotide accession
MG747435 [NCBI]
CDS location
range 12994 -> 13611
strand +
CDS
ATGGACACCGCAGACCTCGCCCGCCTTCTCGAAAACCTCCTGCGCATCGGCACCGTCGCCGAAGTGCGCCACAGCACGCCGCCGGCCGTGCGCGTGCAGACCGGGGGCATTACCACCACCTGGCGCCCCTGGGCCGAGCGCCGCGCCGGCCAGACCCGCACCTGGAACCCGCCGACCGTGGGCGAGCAGGTGCTGTTGTTCTGCCCGAGCGGCGACCCTTCCAACGCCGTCATCCTGTGCGGCATCCCGACCGCCGACAACGACGTACCGAGCAACGACCCCAACCGGACCGTCACGCTGTACCCGGACGGTGCGCTGACCAGCTACGACCACGCCGCCGGCCTGCTGACCGTGCAGGGCGTTAAAACAGTCTTCCTGGAGGCCACCGCGAACGTACTGGTGAAGGCCCCGGCCACCACCTTCGACGGCGATGTGACGGTCAAGGGCCTCTTCTCGTTCGAAAACGGCATGGCCGGCCAGGGTGGAAAGCACGGCAACCAGATCAGCGGCGACCTGGCGCACGCGGGCGGCACGTTGTCGTCCAACGGCGTCGTGCTGCATGACCACGACCACGGCAGCGTGCAGCGCGGCGGCGACTGGACGGAGGGCACGCGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7be8433943945b44f30e564b0e431236697970f452938cd81b499f749d6c921e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8920
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50