Protein

View in Explore
Genbank accession
QDB70826.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MIDYDGLKAIFGEKLPESHIFFATVAAHKFVPNYATLRKEFGMTTAHTNRKVWNKFKEAYEVTVPVVPALAFTKNLAKTLAVDTGAAINLGVTVTGGTAPYTYAWTKDGSPLSGVTGPNFNKATAAAEDAGTYKVVVTDSKSTSITSNECVTTINPGVGG
Physico‐chemical
properties
protein length:160 AA
molecular weight: 16925,00170 Da
isoelectric point:8,60893
aromaticity:0,10000
hydropathy:-0,03750

Domains

Domains [InterPro]
IPR048804
ATT
2–60
IPR048804 IPR007110
DC_0400
STR
6–159
DC_0400
IPR036179
RBD
72–142
IPR036179
IPR013783
STR
76–153
IPR013783
QDB70826.1
1 160
Architecture
ATT
STR
ATT 2-60 | STR 61-159 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_SB6
[NCBI] 		2588086 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Javiana
[NCBI] 		363569 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDB70826.1 [NCBI]
Genbank nucleotide accession
MK809530.1 [NCBI]
CDS location
range 105147 -> 105629
strand -
CDS
ATGATTGATTATGATGGTCTAAAGGCCATTTTTGGTGAAAAGCTGCCAGAATCTCATATCTTCTTTGCTACGGTTGCAGCACACAAGTTCGTTCCAAACTACGCTACTCTACGTAAAGAGTTTGGAATGACCACTGCACATACCAACCGCAAGGTTTGGAATAAGTTCAAAGAAGCATACGAAGTTACTGTTCCGGTTGTTCCGGCTCTAGCTTTCACGAAGAATCTGGCTAAAACTCTAGCTGTTGATACTGGTGCAGCAATTAATCTGGGCGTAACAGTTACTGGTGGTACTGCACCATATACTTATGCTTGGACTAAAGACGGTTCTCCACTTAGTGGTGTTACTGGCCCTAATTTCAACAAAGCTACAGCTGCTGCAGAAGATGCTGGTACTTACAAAGTTGTTGTAACGGATAGTAAATCTACTTCCATTACTTCTAATGAGTGTGTAACAACTATCAACCCTGGTGTTGGAGGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e8360122f73c3c029f51d0ad67e4aefabad412b5a1a0a631ab1909ab64ecc8be
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7576
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Whole genome sequence analysis of broad host range Salmonella enterica bacteriophages Bhandare,S.G., Colavecchio,A., Emond-Rheault,J.-G., Hamel,J., Kukavica-Ibrulj,I., Boyle,B., Levesque,R.C. and Goodridge,L. 2024-03-29 — GenBank