Protein

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Genbank accession
AGG57834.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAQIPNLQSTNTLGTDDQAILRQGTIDKRISLNLAGILSWATREGYSHIGEHTTGSQFPDADSFTTFQGQVFFPADGVTTPYTAIGNDPTADTNLNVKTQRDSINSNTLGGLTNYQATSVANAIDGNGQAESKMLTVGGDLINLEVNQIVVVDDYYGGVTPSNSGVLFFKVVVAGTGTADGGKYIDVPGGEFQLEQNVKRPYSPKAWGAMPNRQGDSTVSINSCSSYLESIGGGDLVIDGDFRITDTVNSYKGINFYGTNPSGKQGGSNLHWDPSGLESEYRLKPVVRYKQPNAEFLDAIPKFSNFGITSPSKAVAGILIDGSVAPVAWWNIHGVVINPDDGTPFNTPSDQFLFGIWSAKGFSYQIGTSTYIKNCVVGVHQMGNDCTSSSLKDSFITTCRYDAVLEGIAGFESSGMSYENPSKKRIVIGNNELYFSNSAVFEANYCFGSVEEHSVFVDKDIRPIYNQIDTDYANWYTDALASIGFSIPSTVSQTDPTGIKFGNNLLAGEVHVPDDRSCVQLIGNTYALTADRSFKDPTLQELLSETVGGGASRVSAYKYRNEDSAYSREDINYISQRQVGEFAIAFDYPDDVALGEFSVVDVDTRFAILTANIESLNDSFNALSGHIEATARLAYVGSNALASLVSNVAGSYLYIREKGQTSVLVNIGDTNVTVSPNTTYELVARTTGKAMSGQVVAIRPTNGITCETVV
Physico‐chemical
properties
protein length:710 AA
molecular weight: 76343,58850 Da
isoelectric point:4,60921
aromaticity:0,09718
hydropathy:-0,20507

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG57834.1
1 710
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,9925
Central domain 219 538 321 0,9847
C-terminal 539 710 171 0,8331
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-538
C-terminal
539-710

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage helene 12B3
[NCBI] 		573173 No lineage information
Host Vibrio splendidus
[NCBI] 		29497 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG57834.1 [NCBI]
Genbank nucleotide accession
HQ316579.1 [NCBI]
CDS location
range 41966 -> 44098
strand +
CDS
ATGGCACAAATTCCAAATTTACAATCAACAAACACACTAGGTACTGACGATCAAGCAATCTTACGTCAAGGTACTATCGATAAACGTATCAGCTTAAACTTGGCAGGGATCTTGTCATGGGCGACTCGTGAAGGATATTCTCATATTGGAGAACATACCACAGGTAGTCAATTCCCTGATGCAGATAGTTTCACAACATTTCAAGGGCAAGTGTTTTTTCCTGCCGATGGTGTGACTACCCCCTACACCGCAATAGGTAATGACCCTACTGCCGACACTAACTTGAATGTTAAAACCCAAAGAGACTCAATCAATTCCAACACTCTCGGAGGCTTAACCAACTACCAAGCTACTAGTGTTGCGAATGCAATAGATGGAAACGGACAGGCGGAAAGTAAAATGCTTACAGTCGGTGGGGATCTAATTAACCTTGAGGTAAATCAAATAGTCGTAGTAGATGACTACTACGGAGGCGTAACTCCTAGTAATTCTGGGGTGTTGTTTTTCAAAGTAGTGGTGGCTGGAACTGGAACGGCAGATGGTGGTAAGTATATTGATGTCCCCGGAGGTGAGTTTCAGTTAGAGCAAAACGTAAAAAGACCTTACAGTCCTAAAGCGTGGGGGGCGATGCCAAACAGACAAGGTGATAGCACAGTATCTATAAACTCATGCTCAAGCTATCTTGAATCTATCGGCGGTGGCGACCTTGTTATAGATGGTGACTTTAGAATTACTGACACTGTTAATTCATATAAAGGAATTAACTTTTACGGAACTAATCCGTCTGGAAAGCAGGGTGGTTCTAATTTGCATTGGGACCCTTCTGGGTTGGAAAGTGAGTACCGACTAAAACCAGTTGTAAGATACAAGCAGCCGAACGCGGAGTTCTTAGACGCAATCCCTAAGTTCTCAAACTTCGGAATAACATCACCTAGCAAAGCGGTTGCAGGAATATTGATTGATGGGTCTGTGGCACCAGTTGCGTGGTGGAATATTCACGGAGTTGTAATAAATCCTGATGATGGCACACCGTTTAATACACCTAGCGATCAGTTTTTATTTGGAATATGGTCAGCTAAGGGGTTTAGCTATCAAATAGGAACATCGACATACATTAAAAACTGCGTAGTTGGCGTTCATCAGATGGGTAACGACTGCACCTCATCAAGCCTAAAAGACTCATTTATTACAACCTGTAGATACGACGCAGTACTTGAGGGTATAGCAGGGTTTGAGTCTTCCGGTATGAGTTACGAAAACCCGTCCAAGAAAAGAATAGTGATTGGTAATAATGAATTGTACTTTTCTAACTCTGCAGTATTTGAGGCGAATTATTGTTTCGGATCAGTAGAGGAGCATTCTGTATTTGTTGATAAAGATATTAGGCCGATATACAACCAGATAGACACAGATTATGCAAACTGGTACACCGATGCACTTGCTAGCATTGGGTTTTCCATACCCTCAACAGTGTCGCAAACAGACCCGACAGGGATAAAGTTCGGAAATAACTTACTAGCAGGTGAGGTTCACGTTCCAGATGATCGATCTTGCGTTCAGCTAATAGGCAACACTTACGCGCTAACTGCTGATAGAAGCTTCAAAGATCCGACTTTACAAGAGCTTCTTTCGGAAACTGTTGGCGGCGGCGCTAGCCGAGTTTCAGCATACAAGTATAGAAACGAAGACTCAGCCTACAGTAGGGAGGATATAAATTACATATCTCAAAGACAAGTTGGAGAGTTCGCGATAGCCTTTGATTACCCTGACGACGTGGCACTTGGTGAGTTCAGCGTTGTTGATGTTGATACTAGGTTCGCCATATTAACCGCTAATATAGAATCTCTTAATGATTCTTTTAATGCCTTGTCTGGACACATAGAGGCGACAGCTAGACTGGCTTACGTTGGTTCTAACGCACTGGCATCGCTAGTGTCTAACGTTGCGGGCTCCTACCTTTACATAAGAGAGAAGGGTCAAACCTCAGTATTGGTAAACATAGGGGACACTAATGTAACGGTATCACCAAATACAACTTATGAACTTGTGGCGCGTACTACAGGTAAGGCAATGAGTGGTCAAGTGGTAGCAATAAGGCCAACTAACGGCATAACGTGTGAGACTGTTGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e31b748fb1ee9b4bbbc5ba92ea45ca95334ff03e6784e6787a62aed7acaa8cbb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6469
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage helene 12B3 Henn,M.R., Polz,M., Kauffman,A.K.M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Richards,J., Rizzolo,K., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank