Protein

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Genbank accession
YP_010108446.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,87
Protein sequence
MALFMGRKPSDNRPLLHVTSGSESISQLHGAPIASTLFHSDIPYLAISKVIEVTQFKHVEARQSGTRYYHYYEPVIPQEVWNYMNQGYLMCGSNVSYHPNYVEHRPIGVYSSDWSPTSADIFIGNFQGSMGGGHPYGGISSGWAPIDMHDMANADETVDQAVRIQSDSFITDYPTSKSYYRNNWSISGLAPKTKNYKRVIQSPNVSASASRATSASFTKENKINRALFANGTTSSRMRIIRPTASAPTTLTYSSTNPSDSNFKLIIYIFNVKYNSSNKLEHVKPDISDGIRISREDMVVGDLAMKNGMFITDPAPNEDLLDSTISSHKYKVKYPFFDRLVKGLTLAQLADYPFPYCRFFKSSNGNWSVNEGAGWYNIDTILLVHSPSALLGTGVSLDFSADEIKYKGSKGEYLIASRARKYTPFVLGGDSAITAVFPAETNTFAQLKQGTSFKKEVIDFGPSDWRRVLNPDQCGNYYKTVVKQRIKLPPGSTNKSYLSVHVSSPYLKGEASSTIAGKTSKMNVGIDGYSGWSNLQYMIFSKDHPDKEAVVSDIGFSTMRDVSKTSSDRSWWYFSSTGNKMQAVRIQYKIRVNWVRNELELVGWYKLTNAALQCAEYSGKTTYYNKLGERDVTYKTPEVRLGFYILGTA
Physico‐chemical
properties
protein length:648 AA
molecular weight: 72455,77990 Da
isoelectric point:9,17090
aromaticity:0,12037
hydropathy:-0,41914

Domains

Domains [InterPro]
IPR059609
RBD
1–634
IPR059609
YP_010108446.1
1 648
Architecture
RBD
RBD 1-634 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010108446.1
1 648
Domain Start End Length (AA) Confidence
N-terminal 1 80 80 0,5033
Central domain 81 279 200 0,3817
C-terminal 280 648 368 0,9202
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-80
Central
81-279
C-terminal
280-648

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage Quinn
[NCBI] 		2736265 Uroviricota > Caudoviricetes > Demerecviridae > Thalassavirus > Thalassavirus quinn
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010108446.1 [NCBI]
Genbank nucleotide accession
NC_055850 [NCBI]
CDS location
range 8096 -> 10042
strand -
CDS
ATGGCACTTTTTATGGGCAGAAAGCCCTCAGATAATAGACCACTATTACATGTAACTAGTGGCAGTGAGTCTATTTCTCAATTACATGGGGCACCTATAGCCTCAACGCTATTTCACTCAGATATACCATACTTAGCAATATCAAAGGTTATAGAGGTAACTCAATTTAAGCACGTAGAGGCTAGACAATCGGGTACTAGATATTACCACTACTATGAACCGGTTATACCACAAGAGGTATGGAACTACATGAACCAAGGATATCTAATGTGTGGCTCAAACGTATCATACCACCCTAACTACGTAGAGCATAGACCTATAGGTGTATATTCTAGTGACTGGTCTCCTACTTCCGCAGATATATTTATAGGTAATTTTCAAGGTTCTATGGGAGGAGGACACCCTTACGGTGGTATTTCCAGTGGTTGGGCACCTATAGATATGCATGATATGGCTAATGCTGACGAAACGGTGGATCAGGCAGTGCGTATCCAAAGTGATTCATTTATAACAGACTACCCTACTAGTAAAAGTTACTATAGAAATAACTGGAGCATATCTGGTTTAGCACCGAAAACTAAGAACTATAAAAGAGTAATTCAGTCTCCAAATGTGTCTGCATCAGCTAGTAGAGCTACATCAGCTAGTTTCACTAAGGAAAACAAAATAAATAGAGCACTATTCGCTAATGGTACTACATCATCTAGGATGCGTATTATTAGACCTACAGCATCAGCTCCAACTACTCTAACTTACTCATCTACTAATCCATCAGATAGTAACTTCAAATTAATTATTTATATATTTAATGTAAAATATAATTCTAGCAACAAACTAGAGCATGTGAAGCCTGATATAAGTGATGGTATACGCATATCTCGTGAAGATATGGTAGTAGGAGATTTAGCTATGAAAAACGGAATGTTCATAACTGACCCTGCTCCAAATGAAGATTTACTAGATAGTACAATTTCTAGTCATAAATATAAAGTCAAGTATCCGTTTTTTGACAGGCTAGTAAAGGGTTTGACGTTGGCACAACTAGCAGACTACCCATTCCCTTACTGTAGATTTTTTAAGAGTAGCAATGGTAACTGGAGTGTTAATGAGGGTGCGGGCTGGTATAACATTGATACGATACTACTAGTGCACTCCCCGTCAGCGCTTCTTGGGACTGGCGTATCACTAGACTTCTCGGCGGATGAAATTAAATATAAAGGAAGTAAAGGTGAATATTTAATAGCATCAAGGGCTAGAAAGTATACACCTTTTGTACTTGGCGGTGATTCGGCTATTACGGCAGTATTTCCAGCTGAAACCAATACCTTCGCGCAATTAAAACAAGGTACTTCATTCAAGAAAGAGGTAATAGACTTCGGGCCATCGGATTGGAGACGTGTTCTGAACCCTGACCAATGTGGGAATTACTATAAAACAGTGGTGAAACAAAGAATAAAGCTACCACCAGGCAGTACTAATAAGAGCTATTTATCAGTGCATGTTAGCTCACCATACTTGAAGGGGGAGGCGAGCAGCACGATTGCTGGTAAAACGTCTAAAATGAATGTAGGTATTGATGGATATTCCGGCTGGTCAAACTTACAATACATGATATTTAGTAAGGATCATCCTGATAAGGAAGCGGTTGTATCTGATATAGGATTCAGCACAATGCGAGATGTATCAAAAACAAGCTCGGATAGGTCTTGGTGGTATTTCTCTAGTACTGGTAATAAGATGCAGGCTGTAAGAATACAATATAAGATACGGGTAAATTGGGTGCGCAATGAGCTAGAATTGGTAGGGTGGTATAAACTTACTAATGCTGCCCTACAGTGTGCTGAGTATTCTGGCAAGACAACATATTATAATAAACTTGGCGAGAGGGACGTAACGTACAAGACACCTGAGGTACGGTTAGGTTTCTATATATTGGGTACGGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a5e13d8a31264159a0bb40e588918558533313b5e088ab6207182b7370955685
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2705
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50