Protein

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Genbank accession
WBY53925.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAVGEIQISALPQAALPIDLSDIFHLKQGIEDKRCTLEQLLAPHSSLRNNPHGVTKTQIGLDNVINALQLVAANNLSDIVNVAEARANLQIMSSEEVNSLVQQHINDKSNPHNTTKAQVGLSNVQNWTTSNLYNEDADKYATARAVNNLYKAVQASYPVGTIHLSMNSANPSTYLICGGTWELVSKGRALVGYASDARPAGSVFGASTVTLSVNNMPQHSHSVSLSGGGHTHNATVSISAFDYGTKTTNSFDYGTKATNTTGNHTHNVSGNTSTNGTHNHDVYPRENDGTGNAVADSDGGGAWRTSRTSSDGAHSHSFNVTSGASGDHSHTVGIGAHSHTVGIGSHTHNGTVAVSSSEHTHSGNTNSVGGGQAVNIEQPSFVLYVWQRTA
Physico‐chemical
properties
protein length:390 AA
molecular weight: 40975,09170 Da
isoelectric point:6,28812
aromaticity:0,05128
hydropathy:-0,42103

Domains

Domains [InterPro]
DC_1039
STR
1–390
DC_1039
IPR051934
Unmapped
102–359
IPR051934
IPR053827
ATT
154–268
IPR053827
WBY53925.1
1 390
Architecture
STR
ATT
STR
STR 1-153 | ATT 154-268 | STR 269-390
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBY53925.1
1 390
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,6749
Central domain 207 379 174 0,1110
C-terminal 380 390 10 0,9975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-379
C-terminal
380-390

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage REP9
[NCBI] 		3022462 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBY53925.1 [NCBI]
Genbank nucleotide accession
OQ174508.1 [NCBI]
CDS location
range 79756 -> 80928
strand +
CDS
ATGGCAGTAGGTGAAATTCAAATTAGTGCCTTGCCTCAAGCAGCCTTACCAATTGACCTTAGTGATATCTTCCATCTTAAGCAGGGTATTGAGGATAAGAGATGCACTCTTGAGCAATTACTTGCTCCACACTCAAGCCTAAGAAATAACCCACATGGTGTTACTAAAACACAAATTGGTTTAGATAATGTTATTAATGCTCTTCAGTTAGTCGCTGCAAATAACTTATCAGATATTGTTAATGTAGCTGAGGCAAGAGCAAATCTACAGATTATGTCTTCAGAAGAGGTTAATAGTCTTGTTCAACAGCATATTAATGATAAGAGTAACCCGCACAATACAACTAAGGCACAGGTAGGGTTGAGTAATGTTCAGAACTGGACAACATCTAACCTTTATAACGAGGATGCAGATAAGTATGCTACAGCAAGAGCAGTAAATAACTTGTACAAGGCTGTTCAGGCTTCCTATCCAGTAGGTACTATCCATCTTTCCATGAACTCTGCAAACCCTTCTACATATTTAATTTGTGGAGGAACTTGGGAGTTGGTTTCAAAAGGTAGGGCATTGGTTGGTTATGCCTCTGATGCAAGACCAGCAGGTTCTGTATTTGGTGCTTCAACTGTCACTTTGTCAGTTAATAATATGCCTCAACACTCCCACTCTGTATCACTTAGTGGTGGTGGCCACACTCATAATGCAACTGTGTCAATCTCAGCTTTTGACTATGGAACTAAGACTACCAACTCTTTTGACTATGGAACAAAAGCTACTAACACAACTGGCAACCATACACACAATGTATCAGGTAACACAAGCACAAATGGTACTCACAACCATGATGTGTATCCTAGAGAAAATGATGGTACTGGTAATGCTGTAGCTGACTCTGATGGTGGTGGAGCATGGAGAACATCAAGAACTTCTAGTGATGGTGCACACTCACACAGTTTTAACGTCACATCTGGTGCATCAGGTGACCACAGCCACACGGTTGGTATTGGTGCTCACAGTCATACTGTTGGTATTGGCTCACATACACACAATGGTACTGTGGCAGTTTCTTCTTCTGAGCATACACATAGTGGTAACACAAATAGTGTTGGTGGAGGTCAGGCTGTGAATATTGAGCAGCCATCCTTCGTCCTGTATGTATGGCAGAGAACAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab529dc30b94c3a441a92a7f92e8aad170d66ff8eb8a11eacdff67d747e3d715
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7254
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Swapped genetic code blocks viral infections and gene transfer Nyerges,A., Vinke,S., Flynn,R., Owen,S.V., Rand,E.A., Budnik,B., Keen,E., Narasimhan,K., Marchand,J.A., Baas-Thomas,M., Liu,M., Chen,K., Chiappino-Pepe,A., Hu,F., Baym,M. and Church,G.M. 2022 — GenBank